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Buku ini menyajikan eksplorasi komprehensif tentang peran strategis mikroorganisme dalam menjawab tantangan global abad ke-21, dari ketahanan pangan, degradasi lingkungan, hingga kebutuhan energi bersih. Tersusun dalam 10 bab yang saling terhubung, buku ini membangun pemahaman berlapis: dimulai dari peran fundamental mikroorganisme dalam ekosistem dan dinamika mikrobioma tanah, berlanjut ke aplikasi bioteknologi untuk pertanian berkelanjutan melalui PGPR dan biofertilizer, bioremediasi, serta biokontrol. Bab-bab berikutnya mengupas kekayaan mikroorganisme laut sebagai sumber senyawa bioaktif, potensi mikroba dalam industri hijau meliputi bioproduk (biosurfaktan, bioplastik, nutrasetikal) dan bioenergi (bioalkohol, biodiesel, biogas, biohidrogen) serta peran mikroorganisme dalam pengelolaan limbah dan kesehatan hewan. Revolusi genomik dan bioinformatika dibahas secara mendalam melalui pendekatan multi-omics (genomik, transkriptomik, proteomik, metabolomik, mikrobiomik), yang membuka cakrawala baru dalam memahami dan merekayasa mikroba. Buku ini ditutup dengan visi integrasi bioteknologi mikroorganisme menuju kehidupan berkelanjutan, termasuk kontribusi mikroba dalam kesehatan manusia dan pangan fungsional. Dengan memadukan dasar ilmiah yang kokoh, studi kasus aplikatif, dan wawasan prospek masa depan, buku ini menjadi referensi esensial bagi mahasiswa, peneliti, praktisi, dan siapa pun yang ingin memahami bagaimana makhluk terkecil di bumi mampu menjadi solusi terbesar bagi peradaban manusia.
Universitas Tanjungpura
Universitas Gontor
A’yun, Q., Asmarany, A., Fitriyah, D., Awaluddin, Rini, I. A., Mahyarudin, Argaheni, N. B., Sinaga, J., Suryanti, E., Kristianto, Y., Asril, M., & Hamida, F. 2022. Mikrobiologi Dasar (R. Watrianthos (ed.); Cetakan 1). Yayaan Kita Menulis.
Abedi, E., & Hashemi, S. M. B. (2020). Lactic acid production – producing microorganisms and substrates sources-state of art. Heliyon, 6(10), e04974. https://doi.org/10.1016/j.heliyon.2020.e04974
Abo, M., Hamouda, B., Saad, A. H., Abd, A., El, A., Mohammed, T., Ahmed, H., Sharawey, E., Abdo, W., & Mahmoud, E. (2025). Trials for reducing the dangerous effect on poultry fed on aflatoxin contaminated ration using nano curcumin. BMC Veterinary Reasearch, 27. https://doi.org/10.1186/ s12917-025-04519-z
Abushaheen, M. A., Muzaheed, Fatani, A. J., Alosaimi, M., Mansy, W., George, M., Acharya, S., Rathod, S., Divakar, D. D., Jhugroo, C., Vellappally, S., Khan, A. A., Shaik, J., & Jhugroo, P. (2020). Antimicrobial Resistance, Mechanisms and Its Clinical Significance. Disease-a-Month, 66(6), 100971. https://doi.org/10.1016/j.disamonth.2020.100971
Adebiyi, A. I., & Oluwayelu, D. O. (2019). Zoonotic fungal diseases and animal ownership in Nigeria. Alexandria Journal of Medicine, 54(4), 397–402. https://doi.org/ 10.1016/j.ajme.2017.11.007
Afikasari, D., Diyah, L., Candra, A., Peternakan, P. S., Peternakan, F., Kahuripan, U., & Jl, K. (2020). Pengaruh suplementasi probiotik melalui pakan terhadap konsumsi pakan ayam petelur strain Isa Brown effects of probiotic supplementation through feedon the feed consumption of layers strain Isa Brown. Jurnal Ternak, 11(01), 35–38. https://doi.org/DOI : 10.30736/jtk.v11i1.67
Agathos, S.N. (2011). Introduction. In: Moo-Young M (ed) Comprehensive Biotechnology, 2nd edn. Academic Press, 1–2. https://doi.org/10.1016/B978-0-08-088504-9.00363-9
Ahmed, S. K., Hussein, S., Qurbani, K., Ibrahim, R. H., Fareeq, A., Mahmood, K. A., & Mohamed, M. G. (2024). Antimicrobial Resistance: Impacts, Challenges, and Future Prospects. Journal of Medicine, Surgery, and Public Health, 2, 100081. https://doi.org/10.1016/j.glmedi.2024.100081
Ajmal, A. W., Yasmin, H., Hassan, M. N., Khan, N., Jan, B. L., & Mumtaz, S. (2022). Heavy Metal–Resistant Plant Growth–Promoting Citrobacter werkmanii Strain WWN1 and Enterobacter cloacae Strain JWM6 Enhance Wheat (Triticum aestivum L.) Growth by Modulating Physiological Attributes and Some Key Antioxidants Under Multi-Metal Stress. Front. Microbiol., 13(815704), 97–114. 10.3389/fmicb.2022.815704
Akinsemolu, A. A. (2018). The role of microorganisms in achieving the sustainable development goals. Journal of Cleaner Production, 182, 139–155. https://doi.org/10.1016/j.jclepro.2018.02.081
Akinsemolu, A. A. (2023). Principles of green microbiology: The microbial blueprint for sustainable development. Environmental Advances, 14 (October), 100440. https://doi.org/10.1016/j.envadv.2023.100440
Al-Amrani, S., Al-Jabri, Z., Al-Zaabi, A., Alshekaili, J., & Al-Khabori, M. (2021). Proteomics: Concepts and applications in human medicine. World Journal of Biological Chemistry, 12(5), 57–69. https://doi.org/10.4331/wjbc.v12.i5.57
Alharbi, K., Ekesi, N., Hasan, A., Asnayanti, A., Liu, J., Murugesan, R., Ramirez, S., Rochell, S., Kidd, M. T., & Alrubaye, A. (2017). Deoxynivalenol and fumonisin predispose broilers to bacterial chondronecrosis with osteomyelitis lameness. Poultry Science, 103(5), 103598. https://doi.org/10.1016/j.psj.2024.103598
Al-Rumaihi, A., Shahbaz, M., Mckay, G., Mackey, H., & Al-Ansari, T. (2022). A review of pyrolysis technologies and feedstock: A blending approach for plastic and biomass towards optimum biochar yield. Renewable and Sustainable Energy Reviews, 167(June), 112715. https://doi.org/10.1016/j.rser.2022.112715
Alsulimani, A., Akhter, N., Jameela, F., Ashgar, R. I., Jawed, A., Hassani, M. A., & Dar, S. A. (2024). The Impact of Artificial Intelligence on Microbial Diagnosis. Microorganisms, 12(6), 1051. https://doi.org/10.3390/microorganisms12061051
Ambaye, T. G., Vaccari, M., Prasad, S., & Rtimi, S. (2021). Preparation, characterization and application of biosurfactant in various industries: A critical review on progress, challenges and perspectives. Environmental Technology and Innovation, 24, 102090. https://doi.org/10.1016/j.eti.2021.102090
Anikwe MAN, Ife K. 2023. The role of soil ecosystem services in the circular bioeconomy. Front. Soil Sci. 3:1–18.doi:10.3389/fsoil.2023.1209100.
Ansorena, D., & Astiasarán, I. (2015). Fermented Foods: Composition and Health effects. Encyclopedia of Food and Health, 649–655. https://doi.org/10.1016/B978-0-12-384947-2.00285-3
Antoszewski, K., Chmielewska, K., Jagiello, K., & Puzyn, T. (2025). Designing RNA sequencing experiments: A practical guide to reproducible gene expression analysis. Computational and Structural Biotechnology Journal, 31, 101–119. https://doi.org/10.1016/j.csbj.2025.12.015
Antoszewski, M., Mierek-adamska, A., & Dabrowska, G. B. (2022). The Importance of Microorganisms for Sustainable Agriculture — A Review. Metabolites, 12(1100), 1–47. https://doi.org/10.3390/metabo12111100
Anwar, K., Puspitasari, I., Siahaan, A. S. A., Mohamad, E., Erdiandini, I., Guntoro, N.N.P.S., L. R. I. N., Widayati, O., & Nurliana. (2026). Pupuk Hijau dalam Sistem Pertanian Organik. Yayasan Kita Menulis.
Aqlinia, M., Astuti, R. I., Prastya, M. E., & Wahyudi, A. T. (2025). Antioxidant potential of melanin pigment from marine sponge-associated actinomycete Micromonospora sp. Journal of Applied Pharmaceutical Science, 15(4), 212–224. https://doi.org/10.7324/JAPS.2025.201566
Ari, M. M., Dadgar, L., Elahi, Z., Ghanavati, R., & Taheri, B. (2024). Genetically Engineered Microorganisms and Their Impact on Human Health. International Journal of Clinical Practice, 2024(2), 1–38. https://doi.org/https://doi.org/10.1155/2024/6638269
Arreola, E. V., Hanson, R. L., Bogardus, C., & Knowler, W. C. (2022). Relationship Between Insulin Secretion and Insulin Sensitivity and Its Role in Development of Type 2 Diabetes: Beyond the Disposition Index. Diabetes, 71(1), 128–141. https://doi.org/10.2337/db21-0416
Arshad, M., Arshad, I., Aslam, H., Sukmawati, D., Anvar, A. H., Shakir, H. A., Khan, M., Franco, M., & Irfan, M. (2025). Microbial bioproducts: current advances, industrial applications, and future perspectives. Journal of Umm Al-Qura University for Applied Sciences, 11(3), 545–560. https://doi.org/10.1007/s43994-025-00247-0
Aryani Siregar, S., Napitupulu, H., & Ginting, R. (2020). Identification of factors affecting a green industry: A literature review. IOP Conference Series: Materials Science and Engineering, 801(1). https://doi.org/10.1088/1757-899X/801/1/012097
Asril, M., Erdiandini, I., Sari, S. P., Mohamad, E., Hasibuan, H. S., Tangio, J. S., Lestari, W., Apriliya, I., & Novianto, E. D. (2024). Mikrobiologi Tanah. Yayasan Kita Menulis.
Aýun, Q., Risah, & Sari, A. K. (2024). Edukasi Pengolahan Sampah Kulit Buah dengan Eco-Enzym di Pondok Pesantren Al Hassan, Bekasi. Abditani: Jurnal Pengabdian Masyarakat, 7(2), 208–212.
Aýun, Q., Suryani, S., & Kurnia, C. (2022). Identidikasi Kapang pada Tempe Bungkus Daun Pisang dan Plastik Asal Pengrajin Tempe Jatiasaih, Bekasi. Bioed: Jurnal Pendidikan Biologi, 10(2), 45–51.
Ayuningtyas, A., Murbawani, E. A., & Nuryanto, N. (2019). The Effect of Tempeh Intake on Spatial Memory in Prediabetic Rats. Nutrition and Food Science, 49(4), 592–599. https://doi.org/10.1108/NFS-03-2018-0071
Baião, A. R., Cai, Z., Poulos, R. C., Robinson, P. J., Reddel, R. R., Zhong, Q., Vinga, S., & Gonçalves, E. (2025). A technical review of multi-omics data integration methods: From classical statistical to deep generative approaches. Briefings in Bioinformatics, 26(4), bbaf355. https://doi.org/10.1093/bib/bbaf355
Balakrishnan, B., Ranishree, J. K., Thadikamala, S., & Panchatcharam, P. (2014). Purification, characterization and production optimization of a vibriocin produced by mangrove associated Vibrio parahaemolyticus. Asian Pacific Journal of Tropical Biomedicine, 4(4), 253–261. https://doi.org/10.12980/APJTB.4.2014C947
Balan, S. S., Kumar, C. G., & Jayalakshmi, S. (2017). Aneurinifactin, a new lipopeptide biosurfactant produced by a marine Aneurinibacillus aneurinilyticus SBP-11 isolated from Gulf of Mannar : Purification, characterization and its biological evaluation. Microbiological Research, 194, 1–9. https://doi.org/10.1016/j.micres.2016.10.005
Barrett, D., Lane, E., Lozano, J. M., Keeffe, K. O., & Byrne, A. W. (2024). Bovine Herpes Virus Type 1 factor and Bovine Viral Diarrhoea ( BVD ) co ‑ infection analysis from Ireland. Scientific Reports, 1, 1–9. https://doi.org/10.1038/s41598-023-50433-5
Basso, L. C., De Amorim, H. V., De Oliveira, A. J., & Lopes, M. L. (2008). Yeast selection for fuel ethanol production in Brazil. FEMS Yeast Research, 8(7), 1155–1163. https://doi.org/10.1111/j.1567-1364.2008.00428.x
Basu, A., Prasad, P., Das, S. N., Kalam, S., Sayyed, R. Z., Reddy, M. S., & Enshasy, H. El. (2021). Plant Growth Promoting Rhizobacteria (PGPR) as Green Bioinoculants: Recent Developments, Constraints, and Prospects. Sustainability, 13(1140), 1–20. https://doi.org/10.3390/su13031140
Bayat, A. (2002). Bioinformatics. BMJ : British Medical Journal, 324(7344), 1018–1022. https://doi.org/10.1136/bmj.324.7344.1018
Behera, B. C., Mishra, R., & Mohapatra, S. (2021). Microbial citric acid: Production, properties, application, and future perspectives. Food Frontiers, 2(1), 62–76. https://doi.org/10.1002/fft2.66
Berendsen RL, Pieterse CMJ, Bakker PAHM. 2012. The rhizosphere microbiome and plant health. Trends Plant Sci. 17(8):478–486. doi:10.1016/-j.tplants.2012.04.001.
Berg G, Rybakova D, Grube M, Köberl M, Price A. 2017. Europe PMC Funders Group The plant microbiome explored : implications for experimental botany. J Exp Bot. 67(4):995–1002. doi:10.1093/-jxb/erv466.The.
Berg, G., Rybakova, D., Fischer, D., Cernava, T., Vergès, M. C., Charles, T., Chen, X., Cocolin, L., Eversole, K., Corral, G. H., Kazou, M., Kinkel, L., Lange, L., Lima, N., Loy, A., Macklin, J. A., & Maguin, E. (2020). Microbiome definition re-visited: old concepts and new challenges. Microbiome, 8(103), 1–22. https://doi.org/10.1186/s40168-020-00875-0
Berg, G., Rybakova, D., Fischer, D., Cernava, T., Vergès, M.-C. C., Charles, T., Chen, X., Cocolin, L., Eversole, K., Corral, G. H., Kazou, M., Kinkel, L., Lange, L., Lima, N., Loy, A., Macklin, J. A., Maguin, E., Mauchline, T., McClure, R., … Schloter, M. (2020). Microbiome definition re-visited: Old concepts and new challenges. Microbiome, 8, 103. https://doi.org/10.1186/s40168-020-00875-0
Bhattacharyya PN, Jha DK. 2012. Plant growth-promoting rhizobacteria (PGPR): emergence in agriculture. World J. Microbiol. Biotechnol. 28(4):1327–1350.doi:10.1007/s11274-011-0979-9.
Bianconi, I., Aschbacher, R., Pagani, E., Bianconi, I., Aschbacher, R., & Pagani, E. (2023). Current Uses and Future Perspectives of Genomic Technologies in Clinical Microbiology. Antibiotics, 12(11). https://doi.org/10.3390/antibiotics12111580
Bjerk, T. R., Severino, P., Jain, S., Marques, C., Silva, A. M., Pashirova, T., & Souto, E. B. (2021). Biosurfactants: Properties and applications in drug delivery, biotechnology and ecotoxicology. Bioengineering, 8(8), 1–18. https://doi.org/10.3390/bioengineering8080115
Blake, C., Christensen, M. N., & Kovács, Á. T. (2021). Molecular Aspects of Plant Growth Promotion and Protection by Bacillus subtilis. Mol Plant Microbe Interact., 34(1), 15–25. 10.1094/MPMI-08-20-0225-CR
Bn, Z., Dayok, O., & Fo, K. (2019). Prevalence of pulmonary mucormycosis among poultry farmers in Barkin Ladi Local government area of Plateau State. Open Access Journal of Microbiology and Biotechnology, 4(2). https://doi.org/10.23880/oajmb-16000143
Bodhaguru, M., Prakash, S., Ramasubburayan, R., Ahila, N. K., Mariselvam, L., Immanuel, G., Palavesam, A., & Kannapiran, E. (2019). Screening, partial purification of antivibriosis metabolite sterol-glycosides from Rhodococcus sp. against aquaculture associate pathogens. Microbial Pathogenesis, 103597. https://doi.org/10.1016/j.micpath.2019.103597
Bose, U., Hewavitharana, A. K., Ng, Y. K., Shaw, P. N., Fuerst, J. A., & Hodson, M. P. (2015). LC-MS-Based metabolomics study of marine bacterial secondary metabolite and antibiotic production in Salinispora arenicola. Mar. Drugs, 13(1), 249-266. https://doi.org/10.3390/md13010249
Bray, F., Laversanne, M., Sung, H., Ferlay, J., Siegel, R. L., Soerjomataram, I., & Jemal, A. (2024). Global Cancer Statistics 2022: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries. CA: A Cancer Journal for Clinicians, 74(3), 229–263. https://doi.org/10.3322/caac.21834
Brlek, P., Bulić, L., Bračić, M., Projić, P., Škaro, V., Shah, N., Shah, P., & Primorac, D. (2024). Implementing Whole Genome Sequencing (WGS) in Clinical Practice: Advantages, Challenges, and Future Perspectives. Cells, 13(6), 504. https://doi.org/10.3390/cells13060504
Brown, A. L., Koskella, B., & Boots, M. (2025). How host-microbiome / holobiont evolution depends on whether the microbiome affects host lifespan or. November 2024, 41–49.
Bufano, P., Di Tecco, C., Fattori, A., Barnini, T., Comotti, A., Ciocan, C., Ferrari, L., Mastorci, F., Laurino, M., & Bonzini, M. (2024). The Effects of Work on Cognitive Functions: A Systematic Review. Frontiers in Psychology, 15, 1351625. https://doi.org/10.3389/fpsyg.2024.1351625
Bugyi, F., Szabó, D., Szabó, G., Révész, Á., Pape, V. F. S., Soltész-Katona, E., Tóth, E., Kovács, O., Langó, T., Vékey, K., & Drahos, L. (2021). Influence of Post-Translational Modifications on Protein Identification in Database Searches. ACS Omega, 6(11), 7469–7477. https://doi.org/10.1021/acsomega.0c05997
Burgener, A., Seth-smith, H. M. B., Kern-baumann, S., Durovic, A., Blaich, A., & Menter, T. (2022). A case study of zoonotic Chlamydia abortus infection : diagnostic challenges from clinical and microbiological perspectives. Open Forum Infectious Diseases, 0–4. https://doi.org/10.1093/ofid/ofac524
Burton, H., Jackson, C., & Abubakar, I. (2014). The impact of genomics on public health practice. British Medical Bulletin, 112(1), 37–46. https://doi.org/10.1093/bmb/ldu032
Cahlia, U., Astuti, R. I., Nomura, J., & Wahyudi, A. T. (2023). Antioxidant properties of active fraction extract derived from yellow-red pigment produced by the marine sponge-associated bacterium Bacillus haikouensis AGS112 and identification of related compounds. HAYATI J. Biosci, 30(5), 874-884. https://doi.org/10.4308/hjb.30.5.874-884
Cardinale, M., Jr, J. V. de C., Müller, H., Berg, G., & Grube, M. (2008). In situ analysis of the bacterial community associated with the reindeer lichen Cladonia arbuscula reveals predominance of Alphaproteobacteria. FEMS Microbiol Ecol., 66(1), 63–71. 10.1111/j.1574-6941.2008.00546.x
Carmona-Gutierrez, D., Kainz, K., Zimmermann, A., Hofer, S. J., Bauer, M. A., Ruckenstuhl, C., Kroemer, G., & Madeo, F. (2022). A Hundred Spotlights on Microbiology: How Microorganisms Shape Our Lives. Microbial Cell, 9(4), 72–79. https://doi.org/10.15698/MIC2022.04.773
Cavicchioli, R., Ripple, W. J., Timmis, K. N., Azam, F., Bakken, L. R., Baylis, M., Behrenfeld, M. J., Boetius, A., Boyd, P. W., Classen, A. T., Crowther, T. W., Danovaro, R., Foreman, C. M., Huisman, J., Hutchins, D. A., Jansson, J. K., Karl, D. M., Koskella, B., Mark Welch, D. B., … Webster, N. S. (2019). Scientists’ Warning to Humanity: Microorganisms and Climate Change. Nature Reviews Microbiology, 17(9), 569–586. https://doi.org/10.1038/s41579-019-0222-5
Chakraborty, S., Talukdar, A., Dey, S., & Bhattacharya, S. (2025). Role of Fungi, Bacteria and Microalgae in Bioremediation of Emerging Pollutants with Special Reference to Pesticides, Heavy Metals and Pharmaceuticals. Discover Environment, 3(1). https://doi.org/10.1007/s44274-025-00217-7
Chaudhary, R., Nawaz, A., Fouillaud, M., Dufossé, L., Haq, I. ul, & Mukhtar, H. (2024). Microbial Cell Factories: Biodiversity, Pathway Construction, Robustness, and Industrial Applicability. Microbiology Research, 15(1), 247–272. https://doi.org/10.3390/microbiolres15010018
Chauhan P, Sharma N, Tapwal A, Kumar A, Verma GS, Meena M, Seth CS, Swapnil P. 2023. Soil microbiome: diversity, benefits and interactions with plants. Sustain. 15(19).doi:10.3390/su151914643.
Chauhan, P., Sharma, N., Tapwal, A., Kumar, A., Verma, G. S., Meena, M., Seth, C. S., & Swapnil, P. (2023). Soil Microbiome: Diversity, Benefits and Interactions with Plants. Sustainability, 15(14643), 1043. https://doi.org/10.3390/su151914643
Che, Q., Qiao, L., Han, X., Liu, Y., Wang, W., Gu, Q., Zhu, T., & Li, D. (2018). Anthranosides A − C, Anthranilate Derivatives from a Sponge-Derived Streptomyces sp. CMN-62. Organic Letters, 6, 10–13. https://doi.org/10.1021/acs.orglett.8b02382
Che, X., Ma, P., Chen, M., & Fan, W. (2025). A comprehensive review of development and utilization of marine microorganisms as new food resources. Journal of Future Foods, 1–35. https://doi.org/10.1016/j.jfutfo.2025.08.020
Chen, C., Wang, M., Zhu, J., Tang, Y., Zhang, H., Zhao, Q., Jing, M., Chen, Y., Xu, X., Jiang, J., & Shen, Z. (2022). Long-term effect of epigenetic modification in plant–microbe interactions: modification of DNA methylation induced by plant growth promoting bacteria mediates promotion process. Microbiome, 10(36), 1–19. https://doi.org/10.1186/s40168-022-01236-9
Chen, Q., Song, Y., An, Y., Lu, Y., & Zhong, G. (2024). Soil Microorganisms: Their Role in Enhancing Crop Nutrition and Health. Diversity, 16(12), 1–26. https://doi.org/10.3390/d16120734
Chen, Q., Song, Y., An, Y., Lu, Y., & Zhong, G. (2024). Soil Microorganisms : Their Role in Enhancing Crop Nutrition and Health. 1–26.
Chen, W. F., Huang, M. H., Tzang, C. H., Yang, M., & Wong, M. S. (2003). Inhibitory Actions of Genistein in Human Breast Cancer (MCF-7) Cells. Biochimica et Biophysica Acta - Molecular Basis of Disease, 1638(2), 187–196. https://doi.org/10.1016/S0925-4439(03)00082-6
Chen, Y. C., Tao, N. L., Hu, S. Y., Tsai, H. Y., Liao, S. C., Tsai, W. L., & Hu, C. Y. (2021). Effect of Tempeh on Gut Microbiota and Anti‐Stress Activity in Zebrafish. International Journal of Molecular Sciences, 22(23), 12660. https://doi.org/10.3390/ijms222312660
Chen, Y., Li, E.-M., & Xu, L.-Y. (2022). Guide to Metabolomics Analysis: A Bioinformatics Workflow. Metabolites, 12(4), 357. https://doi.org/10.3390/metabo12040357
Chhabra, S., Taksande, A. B., & Munjewar, P. (2024). The Penicillin Pioneer: Alexander Fleming’s Journey to a Medical Breakthrough. Cureus, 16(7), e65179. https://doi.org/10.7759/cureus.65179
Chintagunta, A. D., Zuccaro, G., Kumar, M., Kumar, S. P. J., Garlapati, V. K., Postemsky, P. D., Kumar, N. S. S., Chandel, A. K., & Simal-Gandara, J. (2021). Biodiesel Production From Lignocellulosic Biomass Using Oleaginous Microbes: Prospects for Integrated Biofuel Production. Frontiers in Microbiology, 12(8), 1–23. https://doi.org/10.3389/fmicb.2021.658284
Cho, J. S., Kim, G. B., Eun, H., Moon, C. W., & Lee, S. Y. (2022). Designing Microbial Cell Factories for the Production of Chemicals. JACS Au, 2(8), 1781–1799. https://doi.org/10.1021/jacsau.2c00344
Clark, A. J., James W. Lillard, J., Clark, A. J., & James W. Lillard, J. (2024). A Comprehensive Review of Bioinformatics Tools for Genomic Biomarker Discovery Driving Precision Oncology. Genes, 15(8). https://doi.org/10.3390/genes15081036
Cox, E., & Vanrompay, D. (2015). Assessment of Chlamydia suis infection in pig farmers. Transboundary and Emerging Diseases, 1–8. https://doi.org/10.1111/ tbed.12446
Crowther, T. W., Rappuoli, R., Corinaldesi, C., Danovaro, R., Donohue, T. J., Huisman, J., Stein, L. Y., Timmis, J. K., Timmis, K., Anderson, M. Z., Bakken, L. R., Baylis, M., Behrenfeld, M. J., Boyd, P. W., Brettell, I., Cavicchioli, R., Delavaux, C. S., Foreman, C. M., Jansson, J. K., … Galen, L. G. Van. (2024). Scientists’ call to action: Microbes, planetary health, and the Sustainable Development Goals. Cell, 187(19), 5195–5216. https://doi.org/10.1016/j.cell.2024.07.051
Cuartero, J., Querejeta, J. I., Prieto, I., Frey, B., & Alguacil, M. M. (2024). Science of the Total Environment Warming and rainfall reduction alter soil microbial diversity and co-occurrence networks and enhance pathogenic fungi in dryland soils. Science of the Total Environment, 949(July), 175006. https://doi.org/10.1016/j.scitotenv.2024.175006
Cunha, I. de C. ´ M. da, Silva, A. V. ´ R. da, Boleta, E. H. M., Pellegrinetti, T. A., Zagatto, L. F. G., Zagatto, S. dos S. S., Chaves, M. G. de, Mendes, R., Patreze, C. M., Tsai, S. M., & Mendes, L. W. (2024). The interplay between the inoculation of plant growth-promoting rhizobacteria and the rhizosphere microbiome and their impact on plant phenotype. Microbiol. Res., 283(127706), 1–14. https://doi.org/10.1016/j.micres.2024.127706
D. Constable, P., W. Hinchcliff, K., H. Done, S., & Grundberg, W. (2007). Veterinary medicine: A Textbook of the diseases of cattle, horses, sheep, pigs, and goats (sebelas). Elsevier Inc.
Daisley, B. A., & Allen-vercoe, E. (2024). Microbes as medicine. Annals of the New York Academy of Sciences, 1541, 63–82. https://doi.org/10.1111/nyas.15237
Dang, P., Chang, S. X., Chen, J., Qin, X., Ros, G. H., Tedersoo, L., Dang, P., Chang, S. X., Chen, J., Delgado-baquerizo, M., Bahram, M., & Eisenhauer, N. (2025). Article Long-term climate warming substantially reduces global soil microbial richness ll Article Long-term climate warming substantially reduces global soil microbial richness. One Earth, 9(1), 101511. https://doi.org/10.1016/j.oneear.2025.101511
Danquah, C. A., Minkah, P. A. B., Junior, I. O. D., Amankwah, K. B., & Somuah, S. O. (2022). Antimicrobial Compounds from Microorganisms. Antibiotics, 11(3), 1–20. https://doi.org/10.3390/antibiotics11030285
Deckers, M., Deforce, D., Fraiture, M. A., & Roosens, N. H. C. (2020). Genetically modified micro-organisms for industrial food enzyme production: An overview. Foods, 9(3). https://doi.org/10.3390/foods9030326
Degruttola, A. K., Low, D., Mizoguchi, A., & Mizoguchi, E. (2016). Current Understanding of Dysbiosis in Disease in Human and Animal Models. Inflammatory Bowel Diseases, 22(5), 1137–1150. https://doi.org/10.1097/MIB.0000000000000750
Delgado-Baquerizo M, Oliverio AM, Brewer TE, Benavent-gonzález A, Eldridge DJ, Bardgett RD, Maestre FT, Singh BK, Fierer N. 2018. A global atlas of the dominant bacteria from soil. Science. (80). 325:320–325.
Delgado-Baquerizo, M., Maestre, F. T., Reich, P. B., Jeffries, T. C., Gaitan, J. J., Encinar, D., Berdugo, M., Campbell, C. D., & Singh, B. K. (2016). Microbial Diversity Drives Multifunctionality in Terrestrial Ecosystems. Nature Communications, 7, 1–8. https://doi.org/10.1038/ncomms10541
Demain, A. L. (2014). Importance of microbial natural products and the need to revitalize their discovery. Journal of Industrial Microbiology and Biotechnology, 41(2), 185–201. https://doi.org/10.1007/s10295-013-1325-z
Diaz-Troya, S., & Huertas, M. J. (2024). Green microbes: Potential solutions for key sustainable development goals. Microbial Biotechnology, 17(8), 1–8. https://doi.org/10.1111/1751-7915.14546
Dong, K., Song, D., Li, S., Wang, X., Dai, L., Pei, X., Yang, X., Jiang, Y., Dong, K., Song, D., Li, S., Wang, X., Dai, L., Pei, X., Yang, X., & Jiang, Y. (2025). Significance of Whole-Genome Sequencing for the Traceability of Foodborne Pathogens: During the Processing of Meat and Dairy Products. Foods, 14(8). https://doi.org/10.3390/foods14081410
Drakontis, C. E., & Amin, S. (2020). Biosurfactants: Formulations, properties, and applications. Current Opinion in Colloid and Interface Science, 48, 77–90. https://doi.org/10.1016/j.cocis.2020.03.013
Dubey, A., Malla, M. A., Vimal, S. R., Kumar, A., Prasad, S. M., & Khan, M. L. (2025). Plant-microbiome engineering: synergistic microbial partners for crop health and sustainability. Plant Growth Regul, 1–15. https://doi.org/10.1007/s10725-025-01385-5
Edda Francomano, Aci, M. M., Mosca, S., Mohamed, N. Z., Agosteo, G. E., Nicosia, M. G. L. D., Malacrinò, A., & Schena, L. (2026). Plant health in the era of global changes, holobiont biology, and microbiome-based solutions. Horticulture Research. https://doi.org/https://doi.org/10.1093/hr/uhaf364
Ehis-Eriakha, C. B., & Akemu, S. E. (2022). Impact of Heavy Metal Pollution on the Biotic and Abiotic Components of the Environment. South Asian Journal of Research in Microbiology, 13(3), 38–54. https://doi.org/10.9734/sajrm/2022/v13i330302
Eisenhauer N, Lanoue A, Strecker T, Scheu S, Steinauer K, Thakur MP, Mommer L. 2017. Root biomass and exudates link plant diversity with soil bacterial and fungal biomass. Sci. Rep. 7:1–8.doi:10.1038/srep44641.
Ejigu, G. F., Jung, J., Ejigu, G. F., & Jung, J. (2020). Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing. Biology, 9(9). https://doi.org/10.3390/biology9090295
El-Araby, R. (2024). Biofuel production: exploring renewable energy solutions for a greener future. Biotechnology for Biofuels and Bioproducts, 17(1). https://doi.org/10.1186/s13068-024-02571-9
Elazzazy, A. M., Baeshen, M. N., Alasmi, K. M., Alqurashi, S. I., Desouky, S. E., & Khattab, S. M. R. (2025). Where Biology Meets Engineering: Scaling Up Microbial Nutraceuticals to Bridge Nutrition, Therapeutics, and Global Impact. Microorganisms, 13(3). https://doi.org/10.3390/microorganisms13030566
El-seedi, H. R., El-mallah, M. F., Yosri, N., Alajlani, M., Zhao, C., Mehmood, M. A., Du, M., Ullah, H., Daglia, M., Guo, Z., Khalifa, S. A. M., & Shou, Q. (2023). Review of Marine Cyanobacteria and the Aspects Related to Their Roles : Chemical, Biological Properties, Nitrogen Fixation and Climate Change. Marine Drugs, 21(439), 1–34. https://doi.org/10.3390/md21080439
El-Shazly, A. I., El-Deen, A. M. N., Abdelwahed, N. A. M., Shetaia, Y. M., Ibrahim, N. A., & Farid, M. A. (2022). Medium Optimization for Isoflavone Aglycones Production From Fermented Defatted Soybean Flour by Display Of Β-Glucosidase from Bacillus licheniformis Nrc24 and Evaluation of Their Antiviral and Antitumor Activities. Journal of Microbiology, Biotechnology and Food Sciences, 12(2), e5713. https://doi.org/10.55251/jmbfs.5713
Erdiandini, I., Chusniasih, D., Abidin, Z., Nurfitriani, A., Manalu, A. I., Istiadi, K. A., Suryanti, E., Junaedi, A. S., & Marzuki, I. (2023). Mikrobiologi Perairan. Yayasan Kita Menulis.
Esa, F. N., & Him, N. R. N. (2024). Bioaugmentation as Bioremediation Approach for Contaminated Soil: a Review. Jurnal Teknologi, 86(5), 89–102. https://doi.org/10.11113/jurnalteknologi.v86.21085
Falodun, M. O., Olorunfemi, O., & Irinoye, O. O. (2025). Infectious Diseases: Addressing Global Challenges and Prevention Strategies for National Health Improvement. Community Acquired Infection, 12(1). https://doi.org/10.54844/cai.2024.0533
Fan, B.-L., Chen, L.-H., Chen, L.-L., Guo, H., Fan, B.-L., Chen, L.-H., Chen, L.-L., & Guo, H. (2025). Integrative Multi-Omics Approaches for Identifying and Characterizing Biological Elements in Crop Traits: Current Progress and Future Prospects. International Journal of Molecular Sciences, 26(4). https://doi.org/10.3390/ijms26041466
Farzaneh M, Vierheilig H, Lössl A, Kaul HP. 2011. Arbuscular mycorrhiza enhances nutrient uptake in chickpea. Plant, Soil Environ. 57(10):465–470.doi:10.17221/133/2011-PSE.
Faulkner, M., Hoeven, R., Kelly, P. P., Sun, Y., Park, H., Liu, L. N., Toogood, H. S., & Scrutton, N. S. (2023). Chemoautotrophic production of gaseous hydrocarbons, bioplastics and osmolytes by a novel Halomonas species. Biotechnology for Biofuels and Bioproducts, 16(152), 1–14. https://doi.org/10.1186/s13068-023-02404-1
Fierer N. 2017. Embracing the unknown: disentangling the complexities of the soil microbiome. Nature Reviews Microbiology. 15(10): 579–590.
Fortt, J., González, M., Morales, P., Araya, N., Remonsellez, F., Peña, T. C. de la, Ostria-Gallardo, E., & Stoll, A. (2022). Bacterial Modulation of the Plant Ethylene Signaling Pathway Improves Tolerance to Salt Stress in Lettuce (Lactuca sativa L.). Front. Sustain. Food Syst., 6(768250), 1–13. 10.3389/fsufs.2022.768250
Gama JT da. 2023. The role of soils in sustainability, climate change, and ecosystem services: challenges and opportunities. Ecologies. 4(3):552–567.doi:10.3390/ecologies4030036.
Gamez, R., Cardinale, M., Montes, M., Ramirez, S., Schnell, S., & Rodriguez, F. (2019). Screening, plant growth promotion and root colonization pattern of two rhizobacteria (Pseudomonas fluorescens Ps006 and Bacillus amyloliquefaciens Bs006) on banana cv. Williams (Musa acuminata Colla). Microb. Res., 220, 12–20. https://doi.org/10.1016/j.micres.2018.11.006
Gao, B., Chi, L., Zhu, Y., Shi, X., Tu, P., Li, B., Yin, J., Gao, N., Shen, W., & Schnabl, B. (2021). An Introduction to Next Generation Sequencing Bioinformatic Analysis in Gut Microbiome Studies. Biomolecules, 11(4), 530. https://doi.org/10.3390/biom11040530
Gareev, I., Beylerli, O., Ilyasova, T., Mashkin, A., & Shi, H. (2024). The use of bioinformatic analysis to study intracerebral hemorrhage. Brain Hemorrhages, 5(4), 188–196. https://doi.org/10.1016/j.hest.2024.05.002
Garg N, Pandey R. 2015. Effectiveness of native and exotic arbuscular mycorrhizal fungi on nutrient uptake and ion homeostasis in salt-stressed. 25(3):165–180.doi:10.1007/s00572-014-0600-9.
George, R. S., Sivaperumal, P., & Roy, A. (2022). Extracellular polymeric substances from marine actinobacterium of Micromonospora sp. and their antioxidant activity. J. Adv. Pharm. Technol. Res. 3, S80-S83. doi: 10.4103/japtr.japtr_335_22
Ghoran, S. H., Taktaz, F., Sousa, E., Fernandes, C., & Kijjoa, A. (2023). Peptides from Marine-Derived Fungi : Chemistry and Biological Activities. Marine Drugs, 21(510), 1–82. https://doi.org/10.3390/md21100510
Glibert, P. M., & Mitra, A. (2022). From webs, loops, shunts, and pumps to microbial multitasking : Evolving concepts of marine microbial ecology , the mixoplankton paradigm , and implications for a future ocean. Limnology and Oceanography, 67, 585–597. https://doi.org/10.1002/lno.12018
Glick BR. 2010. Using soil bacteria to facilitate phytoremediation. Biotechnol. Adv. 28(3):367–374.doi:10.1016/j.biotechadv.2010.02.001.
Gobena, S., Admassu, B., Kinde, M. Z., & Gessese, A. T. (2024). Proteomics and Its Current Application in Biomedical Area: Concise Review. The Scientific World Journal, 2024, 4454744. https://doi.org/10.1155/2024/4454744
González, A., Fullaondo, A., Odriozola, A., González, A., Fullaondo, A., & Odriozola, A. (2025). Why Are Long-Read Sequencing Methods Revolutionizing Microbiome Analysis? Microorganisms, 13(8). https://doi.org/10.3390/microorganisms13081861
Greub, G. (2018). Chlamydia , rickettsia and other intracellular bacteria. Microbes and Infection, 20(7–8), 391. https://doi.org/10.1016/j.micinf.2018.08.002
Grigson, S. R., Bouras, G., Dutilh, B. E., Olson, R. D., & Edwards, R. A. (2025). Computational function prediction of bacteria and phage proteins. Microbiology and Molecular Biology Reviews, 89(3), e00022-25. https://doi.org/10.1128/mmbr.00022-25
Grzyb, T. (2024). Deciphering Molecular Mechanisms and Diversity of Plant Holobiont Bacteria : Microhabitats , Community Ecology , and Nutrient Acquisition.
Gui, C., Zhang, S., Zhu, X., Ding, W., Huang, H., Gu, Y., Duan, Y., & Ju, J. (2017). Antimicrobial Spirotetronate Metabolites from Marine-Derived Micromonospora harpali SCSIO GJ089. Journal of Natural Products. https://doi.org/10.1021/acs.jnatprod.7b00176
Gupta, A., Gupta, R., & Singh, R. L. (2017). Microbes and Environment. In R. L. Singh (Ed.), Principles and Applications of Environmental Biotechnology for a Sustainable Future (p. 487). Springer. https://doi.org/10.1007/978-981-10-1866-4
Hajnajafi, K., & Iqbal, M. A. (2025). Mass-spectrometry based metabolomics: An overview of workflows, strategies, data analysis and applications. Proteome Science, 23(1), 5. https://doi.org/10.1186/s12953-025-00241-8
Handajani, Y. S., Turana, Y., Yogiara, Y., Sugiyono, S. P., Lamadong, V., Widjaja, N. T., Christianto, G. A. M., & Suwanto, A. (2022). Effects of Tempeh Probiotics on Elderly With Cognitive Impairment. Frontiers in Aging Neuroscience, 14, 891773. https://doi.org/10.3389/fnagi.2022.891773
Hanna, M., Jaqua, E., Nguyen, V., & Clay, J. (2022). B Vitamins: Functions and Uses in Medicine. Permanente Journal, 26(2), 89–97. https://doi.org/10.7812/TPP/21.204
Harahap, I. A., Suliburska, J., Karaca, A. C., Capanoglu, E., & Esatbeyoglu, T. (2025). Fermented Soy Products: A Review of Bioactives for Health from Fermentation to Functionality. Comprehensive Reviews in Food Science and Food Safety , 24(1), e70080. https://doi.org/10.1111/1541-4337.70080
Hariyani, D., Hariyani, P., Mishra, S., & Sharma, M. K. (2025). A Literature Review on Waste Management Treatment and Control Techniques. Sustainable Futures, 9(October 2024). https://doi.org/10.1016/j.sftr.2025.100728
Harris J. 2012. Soil Microbial Communities and Restoration Ecology: Facilitators or Followers? Science (80). 325: 573–574. doi:10.1126/science.1172975.
Hashemi, S., Hashemi, S. E., Lien, K. M., & Lamb, J. J. (2021). Molecular microbial community analysis as an analysis tool for optimal biogas production. Microorganisms, 9(6). https://doi.org/10.3390/microorganisms9061162
Helminiak, L., Mishra, S., & Kim, H. K. (2022). Pathogenicity and virulence of Rickettsia. Virulence, 13(1), 1752–1771. https://doi.org/10.1080/21505594.2022.2132047
Hou, Q., Aqeel, M., Dong, L., Peng, J., Sun, Y., & Li, F. (2026). Enhanced bacteria-fungi associations and soil microbial network stability underpin ecosystem multifunctionality across a 53-year desert restoration chronosequence. Journal of Environmental Management, 397(222), 128355. https://doi.org/10.1016/j.jenvman.2025.128355
Hoz-Romo, M. C. D. La, Díaz, L., & Villamil, L. (2022). Marine Actinobacteria a New Source of Antibacterial Metabolites to Treat Acne Vulgaris Disease — A Systematic Literature Review. Antibiotics, 11(965), 1–37. https://doi.org/10.3390/antibiotics11070965
Hu, X., Xu, B., Chen, M., Li, K., Xiao, Y., Liang, S., Zhang, C., Ma, H., & Song, H. (2024). Development and assessment of cutting-edge biotechnologies. Journal of Biosafety and Biosecurity, 6(1), 51–63. https://doi.org/10.1016/j.jobb.2024.03.001
Huang, Y.-C., Wu, B.-H., Chu, Y.-L., Chang, W.-C., & Wu, M.-C. (2018). Effects of Tempeh Fermentation with Lactobacillus plantarum and Rhizopus oligosporus on Streptozotocin-Induced Type II Diabetes Mellitus in Rats. Nutrients, 10, 1143. https://doi.org/10.3390/nu10081143
Hutchings, M., Truman, A., & Wilkinson, B. (2019). Antibiotics: Past, Present and Future. Current Opinion in Microbiology, 51, 72–80. https://doi.org/10.1016/j.mib.2019.10.008
Ierardi, R. A. (2025). A review of bovine anaplasmosis ( Anaplasma marginale ) with emphasis on epidemiology and diagnostic testing. Journal of Veterenary Diagnostic Investigation, 1–2. https://doi.org/10.1177/10406387251324180
Iskandar, K., Murugaiyan, J., Halat, D. H., Hage, S. El, Chibabhai, V., Adukkadukkam, S., Roques, C., Molinier, L., Salameh, P., & Van Dongen, M. (2022). Antibiotic Discovery and Resistance: The Chase and The Race. Antibiotics, 11(2), 182. https://doi.org/10.3390/antibiotics11020182
Jacquier, N., & Greub, G. (2018). Chlamydiales , Anaplasma and Bartonella : persistence and immune escape of intracellular bacteria. Elsevier, 20, 416–423. https://doi.org/10.1016/j.micinf.2017.11.002
Jatoi, A. S., Nguyen, H. M., & Jeyapaul, A. S. (2025). From Waste to Resource: Microbial Pathways for Sustainable Food Production. Sustainable Food Technology. https://doi.org/10.1039/d5fb00287g
Jayashree BK, Raju K. Chalannavar, Nishant Nandini, Ravindra B. Malabadi, Kiran P. Kolkar, & Divakar MS. (2025). Yeast probiotics fermented food products: Gut microbiome and Women health. World Journal of Advanced Research and Reviews, 27(1), 1209–1230. https://doi.org/10.30574/wjarr.2025.27.1.2523
Jitjumnong, J., Taweechaipaisankul, A., Lin, J.-C., Wongchanla, S., Chuwatthanakhajorn, S., Lin, C.-J., Khang, L. T. P., Linh, N. V., Sangsawad, P., Dinh-Hung, N., Tang, P.-C., Moonmanee, T., Jitjumnong, J., Taweechaipaisankul, A., Lin, J.-C., Wongchanla, S., Chuwatthanakhajorn, S., Lin, C.-J., Khang, L. T. P., … Moonmanee, T. (2025). An Overview of Advancements in Proteomic Approaches to Enhance Livestock Production and Aquaculture. Animals, 15(13). https://doi.org/10.3390/ani15131946
Joos, L., Tender, C. De, Holderbeke, A., Clement, L., Vandecasteele, B., & Debode, J. (2023). Agriculture , Ecosystems and Environment Exploring the microbial response as a potential bio-indicator for soil health : Insights from a controlled incubator experiment. Agriculture, Ecosystems and Environment, 356(June), 108634. https://doi.org/10.1016/j.agee.2023.108634
Jung, S. (2025). Advances in functional analysis of the microbiome: Integrating metabolic modeling, metabolite prediction, and pathway inference with Next-Generation Sequencing data. Journal of Microbiology, 63(1), e.2411006. https://doi.org/10.71150/jm.2411006
Kadar, A. D., Astawan, M., Putri, S. P., & Fukusaki, E. (2020). Metabolomics Based Study of The Effect of Raw Materials to The End Product of Tempe—an Indonesian Fermented Soybean. Metabolites, 10(9), 1–11. https://doi.org/10.3390/metabo10090367
Karnwal, A., Shrivastava, S., Al-Tawaha, A. R. M. S., Kumar, G., Singh, R., Kumar, A., Mohan, A., Yogita, & Malik, T. (2023). Microbial Biosurfactant as an Alternate to Chemical Surfactants for Application in Cosmetics Industries in Personal and Skin Care Products: A Critical Review. BioMed Research International, 2023. https://doi.org/10.1155/2023/2375223
Kasmanas, J. C., Magnúsdóttir, S., Zhang, J., Smalla, K., Schloter, M., Stadler, P. F., de Leon Ferreira de Carvalho, A. C. P., & Rocha, U. (2025). Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp. GigaScience, 14. https://doi.org/10.1093/gigascience/giaf072
Kasmawati, & Nasution, E. S. (2024). Environmental Microbiology: Microbes and Their Roles in Ecosystems. International Journal of Natural Science Studies and Development (IJOSS), 1(2), 95–102. https://doi.org/10.55299/ijoss.v1i2.17
Kaya, C., U˘gurlar, F., & Adamakis, I.-D. S. (2023). Epigenetic and Hormonal Modulation in Plant–Plant Growth-Promoting Microorganism Symbiosis for Drought-Resilient Agriculture. Int. J. Mol. Sci., 24(16064), 1–16. https://doi.org/10.3390/ijms242216064
Kazim, Z. H. J., Abid, N. R. J., Fadhil, H. S. jabbar, Sada, F. A. Z. R. A., & Mohammed, R. mohammed J. (2025). Emerging Trends in Microbial Biotechnology : Applications in Healthcare and Environmental Sustainability. American Journal of Biology and Natural Sciences, 2(3), 119–131.
Keasling, J., Garcia Martin, H., Lee, T. S., Mukhopadhyay, A., Singer, S. W., & Sundstrom, E. (2021). Microbial production of advanced biofuels. Nature Reviews Microbiology, 19(11), 701–715. https://doi.org/10.1038/s41579-021-00577-w
Kellogg, J., & Kang, S. (2020). Metabolomics, an Essential Tool in Exploring and Harnessing Microbial Chemical Ecology. Phytobiomes Journal, 4(3), 195–210. https://doi.org/10.1094/PBIOMES-04-20-0032-RVW
Khan, M. I., Shin, J. H., & Kim, J. D. (2018). The promising future of microalgae : current status, challenges, and optimization of a sustainable and renewable industry for biofuels, feed, and other products. Microbial Cell Factories, 17(36), 1–21. https://doi.org/10.1186/s12934-018-0879-x
Khan, U. A., Riaz, L., Javaid, S., Shehzadi, I., Sufi, I., Naseem, A., Hanif, M. K., & Tahir, M. S. (2023). Journal of Advanced Zoology. Journal of Advanced Zoology, 44, 482–505.
Kirchner, M., Nunez-Garcia, J., Duggett, N., Gosling, R. J., & Anjum, M. F. (2024). Use of transcriptomics and genomics to assess the effect of disinfectant exposure on the survival and resistance of Escherichia coli O157:H7, a human pathogen. Frontiers in Microbiology, 15. https://doi.org/10.3389/fmicb.2024.1477683
Kiswanto, Y., & Astuti, R. D. (2025). Cholesterol Lowering Effects of Tempe Dietary Fiber On Rats. Agrotech: Jurnal Ilmiah Teknologi Pertanian, 7(2), 53–62. https://doi.org/10.37631/agrotech.v7i2.2225
Kitessa, W. M., Fufa, F., & Abera, D. (2022). Biogas Production and Biofertilizer Estimation from Anaerobic Co-Digestion of Blends of Wastewater and Microalgae. International Journal of Chemical Engineering, 2022. https://doi.org/10.1155/2022/3560068
Kiu, R., & Hall, L. J. (2018). An update on the human and animal enteric pathogen Clostridium perfringens. Emerging Microbes & Infections, 1751. https://doi.org/10.1038/s41426-018-0144-8
Knothe, G., & Razon, L. F. (2017). Biodiesel fuels. Progress in Energy and Combustion Science, 58, 36–59. https://doi.org/10.1016/j.pecs.2016.08.001
Kochhar, N., Kavya, I. K., Shrivastava, S., Ghosh, A., Rawat, V. S., Sodhi, K. K., & Kumar, M. (2022). Perspectives on the microorganism of extreme environments and their applications. Current Research in Microbial Sciences, 3(4), 100134. https://doi.org/10.1016/j.crmicr.2022.100134
Kolesinska, B., Fraczyk, J., Binczarski, M., Modelska, M., Berlowska, J., Dziugan, P., Antolak, H., Kaminski, Z. J., Witonska, I. A., & Kregiel, D. (2019). Butanol synthesis routes for biofuel production: Trends and perspectives. Materials, 12(3). https://doi.org/10.3390/ma12030350
Kosmides, A. K., Kamisoglu, K., Calvano, S. E., Corbett, S. A., & Androulakis, I. P. (2013). Metabolomic Fingerprinting: Challenges and Opportunities. Critical Reviews in Biomedical Engineering, 41(3), 205–221. https://doi.org/10.1615/critrevbiomedeng.2013007736
Kumar, P. S. (2021). Microbiomics: Were we all wrong before? Periodontology 2000, 85(1), 8–11. https://doi.org/10.1111/prd.12373
Kumar, P., Ramasamy, P., & Jagadeesan, M. (2025). Advanced proteomic approaches for characterizing halophilic bacteria: Insights into protein stability and industrial applications. Ecological Genetics and Genomics, 37, 100431. https://doi.org/10.1016/j.egg.2025.100431
Kumari, A., Kumar, R., Rani, P., Beniwal, V., Kapoor, K. K., & Sharma, P. K. (2014). Role of Microbes in Sustainable Agriculture. In R. Nagpal, K. Ashwani, & R. Singh (Eds.), Microbes in the Service of Mankind Tiny Bugs with Huge Impact (p. 1128). JBC Press.
Laherrere, J. (2002). Forecasting future production from past discovery. International Journal of Global Energy Issues, 18(2–4), 218–238. https://doi.org/10.1504/ijgei.2002.000961
Larenas-Linnemann, D., Rodríguez-Pérez, N., Arias-Cruz, A., Blandón-Vijil, M. V., Del Río-Navarro, B. E., Estrada-Cardona, A., Gereda, J. E., Luna-Pech, J. A., Navarrete-Rodríguez, E. M., Onuma-Takane, E., Pozo-Beltrán, C. F., & Rojo-Gutiérrez, M. I. (2020). Enhancing innate immunity against virus in times of COVID-19: Trying to untangle facts from fictions. World Allergy Organization Journal, 13(11), 100476. https://doi.org/10.1016/j.waojou.2020.100476
Lee, J. M., Hammarén, H. M., Savitski, M. M., & Baek, S. H. (2023). Control of protein stability by post-translational modifications. Nature Communications, 14(1), 201. https://doi.org/10.1038/s41467-023-35795-8
Leeuwendaal, N. K., Stanton, C., O’toole, P. W., & Beresford, T. P. (2022). Fermented Foods, Health and the Gut Microbiome. Nutrients, 14(7), 1527. https://doi.org/10.3390/nu14071527
Lehmann A, Zheng W, Ryo M, Soutschek K, Redondo MA. 2020. Fungal Traits Important for Soil Aggregation. 10:1–13. doi:10.3389/fmicb.2019.02904.
Li, Q., Zhu, R., Yi, W., Chai, W., Zhang, Z., & Lian, X. (2018). Peniciphenalenins A - F from the culture of a marine-associated fungus Penicillium sp. ZZ901. Phytochemistry, 152, 53–60. https://doi.org/10.1016/j.phytochem.2018.04.021
Li, S., Ji, L., Shi, Q., Wu, H., & Fan, J. (2019). Advances in the production of bioactive substances from marine unicellular microalgae Porphyridium spp. Bioresource Technology, 292, 122048. https://doi.org/10.1016/j.biortech.2019.122048
Li, X., Xu, H., Li, Y., Liao, S., & Liu, Y. (2023). Exploring Diverse Bioactive Secondary Metabolites from Marine Microorganisms Using Co-Culture Strategy. Molecules, 28(6371), 1–22. https://doi.org/10.3390/molecules28176371
Lin, B., Wang, Y., Zhang, P., Yuan, Y., Zhang, Y., & Chen, G. (2020). Gut Microbiota Regulates Neuropathic Pain: Potential Mechanisms and Therapeutic Strategy. Journal of Headache and Pain, 21(1), 103. https://doi.org/10.1186/s10194-020-01170-x
Lin, J., Hu, H., & Dhakal, D. (2025). Editorial : Microorganisms and microbial technologies for industry and environmental protection. Frontiers in Bioengineering and Biotechnology, 13(1637987), 1–2. https://doi.org/10.3389/fbioe.2025.1637987
Lin, P. P., Jaeger, A. J., Wu, T. Y., Xu, S. C., Lee, A. S., Gao, F., Chen, P. W., & Liao, J. C. (2018). Construction and evolution of an Escherichia coli strain relying on nonoxidative glycolysis for sugar catabolism. Proceedings of the National Academy of Sciences of the United States of America, 115(14), 3538–3546. https://doi.org/10.1073/pnas.1802191115
Liu, H. F., Ma, J., Winter, C., & Bayer, R. (2010). Recovery and purification process development for monoclonal antibody production. MAbs, 2(5), 480–499. https://doi.org/10.4161/mabs.2.5.12645
Liu, K., Ding, H., Yu, Y., & Chen, B. (2019). A Cold-Adapted Chitinase-Producing Bacterium from Antarctica and Its Potential in Biocontrol of Plant Pathogenic Fungi. Marine Drugs, 17(695), 1–16. https://doi.org/doi:10.3390/md17120695
Liu, L.-L., Xu, Y., Han, Z., Li, Y.-X., Lu, L., Lai, P.-Y., Zhong, J.-L., Guo, X.-R., Zhang, X.-X., & Qian, P.-Y. (2012). Four New Antibacterial Xanthones from the Marine-Derived Actinomycetes Streptomyces caelestis. Marine Drugs, 10, 2571–2583. https://doi.org/10.3390/md10112571
Liu, W., & Hang, Q. (2025). Symbiotic and Antagonistic Relationships between Microalgae and Environmental Microorganisms. International Journal of Marine Science, 15(4), 209–219. https://doi.org/10.5376/ijms.2025.15.0019
Liu, X., Unaegbunam, E., & Stuart, D. T. (2021). Co-production of isobutanol and ethanol from prairie grain starch using engineered Saccharomyces cerevisiae. Fermentation, 7(3). https://doi.org/10.3390/fermentation7030150
Liu, Y.-X., Qin, Y., & Bai, Y. (2019). Reductionist synthetic community approaches in root microbiome research. Curr. Opin. Microbiol., 49, 97–102. 10.1016/j.mib.2019.10.010
Lowe, R., Shirley, N., Bleackley, M., Dolan, S., & Shafee, T. (2017). Transcriptomics technologies. PLoS Computational Biology, 13(5), e1005457. https://doi.org/10.1371/journal.pcbi.1005457
Lunney, J. K., Fang, Y., Ladinig, A., Chen, N., Li, Y., Rowland, B., & Renukaradhya, G. J. (2015). Porcine reproductive and Respiratory Syndrome Virus ( PRRSV ): Pathogenesis and interaction with the immune system. Review in Advance, November, 1–26. https://doi.org/10.1146/annurev-animal-022114-111025
Luo N, Li X, Yu A, Jun L, Ming H, Xiang L, Ying Q, Hui C, Hung M, Li H. 2017. Science of the Total Environment Does arbuscular mycorrhizal fungus affect cadmium uptake and chemical forms in rice at different growth stages ?. Sci. Total Environ. 599–600:1564–1572.doi:10.1016/j.scitotenv.2017.05.047.
Luo, Y., Zhao, C., & Chen, F. (2024). Multiomics Research: Principles and Challenges in Integrated Analysis. BioDesign Research, 6, 0059. https://doi.org/10.34133/bdr.0059
Ma, L., Zhao, H., Wu, L. B., Cheng, Z., & Liu, C. (2023). Impact of the microbiome on human, animal, and environmental health from a One Health perspective. Science in One Health, 2, 100037. https://doi.org/10.1016/j.soh.2023.100037
Ma, W., Tang, S., & Dengzeng, Z. (2022). Root exudates contribute to belowground ecosystem hotspots : A review. Frontiers in Microbiology, October, 1–19. https://doi.org/10.3389/fmicb.2022.937940
Ma, Z., Zuo, T., Frey, N., & Rangrez, A. Y. (2024). A systematic framework for understanding the microbiome in human health and disease: From basic principles to clinical translation. Signal Transduction and Targeted Therapy, 9(1), 237. https://doi.org/10.1038/s41392-024-01946-6
Madhogaria, B., Bhowmik, P., & Kundu, A. (2022). Correlation Between Human Gut Microbiome and Diseases. Infectious Medicine, 1(3), 180–191. https://doi.org/10.1016/j.imj.2022.08.004
Madigan, Bender, Buckley, Sattley, & Stahl. (2019). Brock Biology of Microorganisms (15th ed.). Pearson.
Madigan, M. T., Martinko, J. M., Bender, K. S., Buckley, D. H., & Stahl, D. A. (2015). Brock Biology of Microorganism (Fourteenth). Pearson.
Madigan, M., Martinko, J., Stahl, D., & Clark, D. (2019). Brock biology of microorganism. In Person Education (13th ed., Vols. s3-XII, Issue 310). Pearson Education, Inc. https://doi.org/10.1093/nq/s3-XII.310.469-a
Maldonado Galdeano, C., Novotny Nuñez, I., Carmuega, E., De Moreno De Leblanc, A., & Perdigón, G. (2015). Role of Probiotics and Functional Foods in Health: Gut Immune Stimulation by Two Probiotic Strains and a Potential Probiotic Yoghurt. In Endocrine, Metabolic & Immune Disorders-Drug Targets (Vol. 15).
Manzanera, M. (2025). From Microbial Consortia to Ecosystem Resilience : The Integrative Roles of Holobionts in Stress Biology. Biology, 14(4), 1–20. https://doi.org/10.3390/biology14091203
Marcìa-Fuentes, J. A., Aleman, R. S., Areche, F. O., Flores, D. C., Roman, A. V., Martín-Vertedor, D., & Montero-Fernández, I. (2026). Functional Foods: A Review of Foods Ingredient and Their Health Benefits. Food and Humanity, 6, 100953. https://doi.org/10.1016/j.foohum.2025.100953
Marcus, K., Lelong, C., Rabilloud, T., Marcus, K., Lelong, C., & Rabilloud, T. (2020). What Room for Two-Dimensional Gel-Based Proteomics in a Shotgun Proteomics World? Proteomes, 8(3). https://doi.org/10.3390/proteomes8030017
Markande, A. R., Patel, D., & Varjani, S. (2021). A review on biosurfactants: properties, applications and current developments. Bioresource Technology, 330(1), 124963. https://doi.org/10.1016/j.biortech.2021.124963
Marzban, G., & Tesei, D. (2025). The Extremophiles : Adaptation Mechanisms and Biotechnological Applications. Biology, 14(412), 1–16. https://doi.org/10.3390/ biology14040412
Marzban, G., & Tesei, D. (2025). The Extremophiles: Adaptation Mechanisms and Biotechnological Applications. Biology, 14(4), 412. https://doi.org/10.3390/biology14040412
Matassa, S., Boon, N., Pikaar, I., & Verstraete, W. (2016). Microbial protein: future sustainable food supply route with low environmental footprint. Microbial Biotechnology, 9(5), 568–575. https://doi.org/10.1111/1751-7915.12369
Maulina NMI, Darmayasa IDN. 2018. Pemanfaatan rizobakteri isolat Al7Kla untuk memacu pertumbuhan. DwijenAGRO. 8(2): 134–143.
McCarlie, S. J., du Preez, L. L., Hernandez, J. C., Boucher, C. E., & Bragg, R. R. (2024). Transcriptomic signature of bacteria exposed to benzalkonium chloride. Research in Microbiology, 175(4), 104151. https://doi.org/10.1016/j.resmic.2023.104151
Mcvey, D. S., Kennedy, M., Chengappa, M. ., & Wilkes, R. (2022). Veterinary Microbiology - 4th Edition (D. S. Mcvey, M. Kennedy, M. . Chengappa, & R. Wilkes (eds.); Fourth). John Wiley & Sons, Inc.,.
Mirmohamadsadeghi, S., Karimi, K., Azarbaijani, R., Parsa Yeganeh, L., Angelidaki, I., Nizami, A. S., Bhat, R., Dashora, K., Vijay, V. K., Aghbashlo, M., Gupta, V. K., & Tabatabaei, M. (2021). Pretreatment of lignocelluloses for enhanced biogas production: A review on influencing mechanisms and the importance of microbial diversity. Renewable and Sustainable Energy Reviews, 135(8), 110173. https://doi.org/10.1016/j.rser.2020.110173
Mishra, T., Tiwari, P. B., Kanchan, S., & Kesheri, M. (2025). Advances in Microbial Bioremediation for Effective Wastewater Treatment. Water (Switzerland), 17(22), 1–19. https://doi.org/10.3390/w17223196
Misu, I. J., Kayess, M. O., Siddiqui, M. N., Gupta, D. R., Islam, M. N., & Islam, T. (2025). Microbiome Engineering for Sustainable Rice Production: Strategies for Biofertilization, Stress Tolerance, and Climate Resilience. Microorganisms, 13(233), 1–40. https://doi.org/10.3390/microorganisms13020233
Mitra, D., Mitra, D., Sabri Bensaad, M., Sinha, S., Pant, K., Pant, M., Priyadarshini, A., Singh, P., Dassamiour, S., Hambaba, L., Panneerselvam, P., & Das Mohapatra, P. K. (2022). Evolution of bioinformatics and its impact on modern bio-science in the twenty-first century: Special attention to pharmacology, plant science and drug discovery. Computational Toxicology, 24, 100248. https://doi.org/10.1016/j.comtox.2022.100248
Mondol, M. A. M., Shin, H. J., & Islam, M. T. (2013). Diversity of Secondary Metabolites from Marine Bacillus Species: Chemistry and Biological Activity. Marine Drugs, 11, 2846–2872. https://doi.org/10.3390/md11082846
Muchane MN, Pulleman MM, Vanlauwe B, Joyce J, Kuyper, Thomas W. 2018. Impact of arbuscular mycorrhizal fungi and earthworms on soil aggregate stability , glomalin , and performance of pigeonpea , Cajanus cajan. Soil Res.:1–13.doi:doi.org/10.1071/SR18096.
Mukhoyaroh, H., Kesehatan, S., & Merauke, Y. (2015). Pengaruh Jenis Kedelai, Waktu dan Suhu Pemeraman Terhadap Kandungan Protein Tempe Kedelai. Florea: Jurnal Biologi Dan Pembelajarannya, 2(2), 47–51.
Niu, B., Paulson, J. N., Zheng, X., & Kolter, R. (2017). Simplified and representative bacterial community of maize roots. Microbiology, 114(12), E2450–E2459. https://doi.org/10.1073/pnas.1616148114
Niu, B., Wang, W., Yuan, Z., Sederof, R. R., Sederoff, H., Chiang, V. L., & Borriss, R. (2020). Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease. Front. Microbiol., 11(585404), 1–16. 10.3389/fmicb.2020.585404
Nnaji, P. T., Morse, H. R., Adukwu, E., & Chidugu-ogborigbo, R. U. (2022). Sponge – Microbial Symbiosis and Marine Extremozymes : Current Issues and Prospects. Sustainability, 14(6984), 1–10. https://doi.org/10.3390/su14126984
Noranarttakun, P., & Pharino, C. (2021). How does the green industry policy impact a developing country? A case study of the electronic products and electrical equipment manufacturing sector in Thailand. Environment and Natural Resources Journal, 19(5), 402–412. https://doi.org/10.32526/ennrj/19/2021028
Nosheen, S., Ajmal, I., & Song, Y. (2021). Microbes as Biofertilizers, a Potential Approach for Sustainable Crop Production. Sustainability, 13(1868), 1–20. https://doi.org/10.3390/su13041868
Nurkolis, F., Qhabibi, F. R., Yusuf, V. M., Bulain, S., Praditya, G. N., Lailossa, D. G., Mahira, M. F. N. Al, Prima, E. N., Arjuna, T., Rahayu, S., Gunawan, W. Ben, Kartawidjajaputra, F., Subali, D., & Permatasari, H. K. (2022). Anticancer Properties of Soy-Based Tempe: A Proposed Opinion for Future Meal. Frontiers in Oncology, 12, 1054399. https://doi.org/10.3389/fonc.2022.1054399
Nyangchak, N. (2022). Emerging green industry toward net-zero economy: A systematic review. Journal of Cleaner Production, 378(10), 134622. https://doi.org/10.1016/j.jclepro.2022.134622
O’Connell, T. M. (2020). The Application of Metabolomics to Probiotic and Prebiotic Interventions in Human Clinical Studies. Metabolites, 10(3). https://doi.org/10.3390/metabo10030120
Ogunrinola, G. A., Oyewale, J. O., Oshamika, O. O., & Olasehinde, G. I. (2020). The Human Microbiome and Its Impacts on Health. International Journal of Microbiology, 2020, 8045646. https://doi.org/10.1155/2020/8045646
Osman, A. I., Mehta, N., Elgarahy, A. M., Hefny, M., Al-Hinai, A., Al-Muhtaseb, A. H., & Rooney, D. W. (2022). Hydrogen production, storage, utilisation and environmental impacts: a review. In Environmental Chemistry Letters, 20(1), 153–188. https://doi.org/10.1007/s10311-021-01322-8
Oulas, A., Minadakis, G., Zachariou, M., Sokratous, K., Bourdakou, M. M., & Spyrou, G. M. (2017). Systems Bioinformatics: Increasing precision of computational diagnostics and therapeutics through network-based approaches. Briefings in Bioinformatics, 20(3), 806–824. https://doi.org/10.1093/bib/bbx151
Pal, S., Mondal, S., Das, G., Khatua, S., & Ghosh, Z. (2020). Big data in biology: The hope and present-day challenges in it. Gene Reports, 21, 100869. https://doi.org/10.1016/j.genrep.2020.100869
Paliwoda, D., & Mikiciuk, G. (2020). Use of Rhizosphere Microorganisms in Plant Production - A Review Study. Journal of Ecological Engineering, 21(8), 292–310. https://doi.org/10.12911/22998993/126597
Pan, C., Hassan, S. S. ul, Muhammad, I., & Jin, H. (2025). Marine fungi as a goldmine for novel antibiotics : a 2024 perspective. Frontiers in Marine Science, 11(1538136), 1–12. https://doi.org/10.3389/fmars.2024.1538136
Pandey, A., Adama, N., Adjallé, K., & Blais, J. F. (2022). Sustainable applications of polyhydroxyalkanoates in various fields: A critical review. International Journal of Biological Macromolecules, 221(5), 1184–1201. https://doi.org/10.1016/j.ijbiomac.2022.09.098
Pandita, V., Parihar, A., Parihar, D. S., Panda, S., Shanmugarajan, D., Kumari, L., & Badwaik, H. R. (2022). System and network biology-based computational approaches for drug repositioning. Computational Approaches for Novel Therapeutic and Diagnostic Designing to Mitigate SARS-CoV-2 Infection, 267–290. https://doi.org/10.1016/B978-0-323-91172-6.00003-0
Pane, K., Boccella, S., Guida, F., Franzese, M., Maione, S., & Salvatore, M. (2022). Role of Gut Microbiota in Neuropathy and Neuropathic Pain States: A Systematic Preclinical Review. Neurobiology of Disease, 170, 105773. https://doi.org/10.1016/j.nbd.2022.105773
Panthee, B., Gyawali, S., Panthee, P., Techato, K., Panthee, B., Gyawali, S., Panthee, P., & Techato, K. (2022). Environmental and Human Microbiome for Health. Life, 12(3). https://doi.org/10.3390/life12030456
Pardo-Díaz, S., Romero-Perdomo, F., Mendoza-Labrador, J., Delgadillo-Duran, D., Castro-Rincon, E., Silva, A. M. M., Rojas-Tapias, D. F., Cardoso, E. J. B. N., & Estrada-Bonilla, G. A. (2021). Endophytic PGPB Improves Plant Growth and Quality, and Modulates the Bacterial Community of an Intercropping System. Front. Sustain. Food Syst., 5(715270), 1–10. 10.3389/fsufs.2021.715270
Park, I., & Mannaa, M. (2025). Fermented Foods as Functional Systems: Microbial Communities and Metabolites Influencing Gut Health and Systemic Outcomes. Foods, 14(13), 2292. https://doi.org/10.3390/foods14132292
Pérez-Cobas, A. E., Gomez-Valero, L., & Buchrieser, C. (2020). Metagenomic approaches in microbial ecology: An update on whole-genome and marker gene sequencing analyses. Microbial Genomics, 6(8), e000409. https://doi.org/10.1099/mgen.0.000409
Picard, M., Scott-Boyer, M.-P., Bodein, A., Périn, O., & Droit, A. (2021). Integration strategies of multi-omics data for machine learning analysis. Computational and Structural Biotechnology Journal, 19, 3735–3746. https://doi.org/10.1016/j.csbj.2021.06.030
Pinedo-rivilla, C., Aleu, J., & Durán-Patrón, R. (2022). Cryptic Metabolites from Marine-Derived Microorganisms Using OSMAC and Epigenetic Approaches. Marine Drugs, 20(84), 1–34. https://doi.org/10.3390/md20020084
Pinu, F. R., Beale, D. J., Paten, A. M., Kouremenos, K., Swarup, S., Schirra, H. J., & Wishart, D. (2019). Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community. Metabolites, 9(4), 76. https://doi.org/10.3390/metabo9040076
Piovani, D., Nikolopoulos, G. K., & Bonovas, S. (2022). Non-Communicable Diseases: The Invisible Epidemic. Journal of Clinical Medicine, 11(19), 5939. https://doi.org/10.3390/jcm11195939
Poetsch, A. R. (2020). The genomics of oxidative DNA damage, repair, and resulting mutagenesis. Computational and Structural Biotechnology Journal, 18, 207–219. https://doi.org/10.1016/j.csbj.2019.12.013
Poli, A., Finore, I., Romano, I., Gioiello, A., Lama, L., & Nicolaus, B. (2017). Microbial Diversity in Extreme Marine Habitats and Their Biomolecules. Microorganisms, 5(25), 1–30. https://doi.org/10.3390/microorganisms5020025
Poljsak, B., Kovač, V., & Milisav, I. (2021). Antioxidants, food processing and health. Antioxidants, 10(3), 1–11. https://doi.org/10.3390/antiox10030433
Przymus, P., Rykaczewski, K., Martín-Segura, A., Truu, J., Carrillo De Santa Pau, E., Kolev, M., Naskinova, I., Gruca, A., Sampri, A., Frohme, M., & Nechyporenko, A. (2025). Deep learning in microbiome analysis: A comprehensive review of neural network models. Frontiers in Microbiology, 15. https://doi.org/10.3389/fmicb.2024.1516667
Puri, V., Nagpal, M., Singh, I., Singh, M., Dhingra, G. A., Huanbutta, K., Dheer, D., Sharma, A., & Sangnim, T. (2022). A Comprehensive Review on Nutraceuticals: Therapy Support and Formulation Challenges. Nutrients, 14(21), 1–28. https://doi.org/10.3390/nu14214637
Putri, R. H. N., Situmorang, N., & Pakpahan, E. A. (2024). The Effect of Giving Tempeh Flour (Rhizopus oligosporus) on The Body Weight of Mice (Mus muscullus) on A Diet High in Saturated Fat. Proceedings International Conference on Lifestyle Diseases and Natural Sciences, 1.
Qiu, S., Cai, Y., Yao, H., Lin, C., Xie, Y., Tang, S., & Zhang, A. (2023). Small molecule metabolites: Discovery of biomarkers and therapeutic targets. Signal Transduction and Targeted Therapy, 8, 132. https://doi.org/10.1038/s41392-023-01399-3
Quinn, P., Markey, B., Leonard, F., Fitzpatrick, E., Fanning, S., & Hartigan, P. (2011). Veterinary microbiology and microbial disease. John Wiley & Sons, Inc.,.
Qumsani, A. T. (2025). The contribution of microorganisms to sustainable development : towards a green future through synthetic biology and systems biology. Journal of Umm Al-Qura University for Applied Sciences, 11(4), 712–728. https://doi.org/10.1007/s43994-024-00180-8
Rabalais, N. N., Diaz, R. J., Levin, L. A., Turner, R. E., Gilbert, D., & Zhang, J. (2010). Dynamics and distribution of natural and human-caused hypoxia. Biogeosciences, 7, 585–619.
Rahman, A., Zereen, F., Rana, L., Hossain, G., Shimada, M., & Saha, S. (2025). Foot-and-mouth disease in Asia. Virus Research, 351(December 2024), 199514. https:// doi.org/10.1016/j.virusres.2024.199514
Rai, S., Solanki, M. K., Anal, A. K. D., Sagar, A., Solanki, A. C., Kashyap, B. K., & Pandey, A. K. (2020). Emerging Frontiers of Microbes as Agro-Waste Recycler. In A. K. P. Brijendra Kumar Kashyap, Manoj Kumar Solanki, Dev Vrat Kamboj (Ed.), Waste to Energy: Prospects and Applications (p. 438). Springer Singapore. https://doi.org/10.1007/978-981-33-4347-4
Ramakrishna W, Yadav R, Li K. 2019. Plant growth promoting bacteria in agriculture : Two sides of a coin. Appl. Soil Ecol. 138:10–18.doi:10.1016/j.apsoil.2019.02.019.
Ramamurthy, P. C., Singh, S., Kapoor, D., Parihar, P., Samuel, J., Prasad, R., Kumar, A., & Singh, J. (2021). Microbial biotechnological approaches: renewable bioprocessing for the future energy systems. Microbial Cell Factories, 20(1), 1–11. https://doi.org/10.1186/s12934-021-01547-w
Ramamurthy, P. C., Singh, S., Kapoor, D., Parihar, P., Samuel, J., Prasad, R., Kumar, A., & Singh, J. (2021). Microbial biotechnological approaches : renewable bioprocessing for the future energy systems. Microbial Cell Factories, 20(55), 1–11. https://doi.org/10.1186/s12934-021-01547-w
Ramos, J. L., & Segura, A. (2024). Microbial biotechnology and beyond : A roadmap for sustainable development and climate mitigation in the transition from fossil fuels to green chemistry. Microbial Biotechnology, 17, 1–3. https://doi.org/10.1111/1751-7915.14434
Ranapangu, B., Sandhu, M., & Paul, A. T. (2025). LC-MS-based proteomics: Insights into natural product-directed cellular targeting. Drug Discovery Today, 30(12), 104534. https://doi.org/10.1016/j.drudis.2025.104534
Rani, A., Saini, K. C., Bast, F., Mehariya, S., Bhatia, S. K., Lavecchia, R., & Zuorro, A. (2021). Microorganisms: A potential source of bioactive molecules for antioxidant applications. Molecules, 26(4), 1–34. https://doi.org/10.3390/molecules26041142
Rapparini F, Peñuelas J. 2014. Mycorrhizal Fungi to Alleviate Drought Stress on Plant Growth. 1:21–42.doi:10.1007/978-1-4614-9466-9.
Rathod, N., Elabed, N., Punia, S., Ozogul, F., Kim, S. K., & Rocha, J. M. (2023). Recent Developments in Polyphenol Applications on Human Health: A Review with Current Knowledge. Plants, 12(3), 1–30. https://doi.org/10.3390/plants12061217
Raveendran, S., Parameswaran, B., Ummalyma, S. B., Abraham, A., Mathew, A. K., Madhavan, A., Rebello, S., & Pandey, A. (2018). Applications of microbial enzymes in food industry. Food Technology and Biotechnology, 56(1), 16–30. https://doi.org/10.17113/ftb.56.01.18.5491
Reddy, V., Mccarthy, M., & Raval, A. P. (2022). Neurobiology of disease xenoestrogens impact brain estrogen receptor signaling during the female lifespan : A precursor to neurological disease ? Neurobiology of Disease, 163, 105596. https://doi.org/10.1016/ j.nbd.2021.105596
Reverchon, F., Contreras-Ramos, S. M., Eskalen, A., Guerrero-Analco, J. A., Quiñones-Aguilar, E. E., Rios-Velasco, C., & Velázquez-Fernández, J. B. (2021). Microbial Biocontrol Strategies for Ambrosia Beetles and Their Associated Phytopathogenic Fungi. Front. Sustain. Food Syst, 5(737977), 1–13. 10.3389/fsufs.2021.737977
Reygaert, W. C. (2018). An Overview of The Antimicrobial Resistance Mechanisms of Bacteria. AIMS Microbiology, 4(3), 482–501. https://doi.org/10.3934/microbiol.2018.3.482
Roach, D. J., & Rafiq, M. (2025). Bioactivity of microbial biofilms in extreme environments. September, 1–15. https://doi.org/10.3389/fmicb.2025.1602583
Roesch, L. F. W., Fulthorpe, R. R., Riva, A., Casella, G., Km, A., Kent, A. D., Daroub, S. H., Camargo, F. A. O., Farmerie, W. G., & Triplett, E. W. (2007). Pyrosequencing enumerates and contrasts soil microbial diversity. International Society for Microbial Ecology, 1, 283–290. https://doi.org/10.1038/ismej.2007.53
Rollin, J. A., Del Campo, J. M., Myung, S., Sun, F., You, C., Bakovic, A., Castro, R., Chandrayan, S. K., Wu, C. H., Adams, M. W. W., Senger, R. S., & Zhang, Y. H. P. (2015). High-yield hydrogen production from biomass by in vitro metabolic engineering: Mixed sugars coutilization and kinetic modeling. Proceedings of the National Academy of Sciences of the United States of America, 112(16), 4964–4969. https://doi.org/10.1073/pnas.1417719112
Rymaszewska, A., & Piotrowski, M. (2024). Rickettsia Species : Genetic variability , vectors , and rickettsiosis — A review. Pathogens, 13, 2–13.
Sadanov, A. K., Baimakhanova, B. B., Orasymbet, S. E., Ratnikova, I. A., Turlybaeva, Z. Z., Baimakhanova, G. B., Amitova, A. A., Omirbekova, A. A., Aitkaliyeva, G. S., Kossalbayev, B. D., & Belkozhayev, A. M. (2025). Engineering Useful Microbial Species for Pharmaceutical Applications. Microorganisms, 13(599), 1–26. https://doi.org/10.3390/microorganisms13030599
Sakai, T., & Morimoto, Y. (2022). The History of Infectious Diseases and Medicine. Pathogens, 11(10), 1147. https://doi.org/10.3390/pathogens11101147
Salam, M. A., Al-Amin, M. Y., Salam, M. T., Pawar, J. S., Akhter, N., Rabaan, A. A., & Alqumber, M. A. A. (2023). Antimicrobial Resistance: A Growing Serious Threat for Global Public Health. Healthcare (Switzerland), 11(13), 1946. https://doi.org/10.3390/healthcare11131946
Samadhiya, K., Sangtani, R., Nogueira, R., & Bala, K. (2022). Insightful Advancement and Opportunities for Microbial Bioplastic Production. Frontiers in Microbiology, 12(1), 1–20. https://doi.org/10.3389/fmicb.2021.674864
Sanches, P. H. G., de Melo, N. C., Porcari, A. M., & de Carvalho, L. M. (2024). Integrating Molecular Perspectives: Strategies for Comprehensive Multi-Omics Integrative Data Analysis and Machine Learning Applications in Transcriptomics, Proteomics, and Metabolomics. Biology, 13(11), 848. https://doi.org/10.3390/biology13110848
Sangtani, R., Nogueira, R., Yadav, A. K., & Kiran, B. (2023). Systematizing Microbial Bioplastic Production for Developing Sustainable Bioeconomy: Metabolic Nexus Modeling, Economic and Environmental Technologies Assessment. Journal of Polymers and the Environment, 31(7), 2741–2760. https://doi.org/10.1007/s10924-023-02787-0
Santos, R. A. dos, Blabolil, P., Santos, R. A. dos, & Blabolil, P. (2025). Comparison of Bioinformatic Pipelines for eDNA Metabarcoding Data Analysis of Fish Populations. Fishes, 10(5). https://doi.org/10.3390/fishes10050214
Saraswati R, Sumarno. 2008. Pemanfaatan Mikroba Penyubur Tanah Sebagai Komponen Teknologi Pertanian. Iptek Tanam. Pangan. 3(1):41–58.
Sardi, A. (2025). Crucial Role of Microorganisms in Global Biogeochemical Cycles: Mechanisms, Interactions, and Environmental Implications. Indonesian Journal of Environmental Sustainability, 3(1), 71–90. https://doi.org/10.22373/ijes.v3i1.7802
Satam, H., Joshi, K., Mangrolia, U., Waghoo, S., Zaidi, G., Rawool, S., Thakare, R. P., Banday, S., Mishra, A. K., Das, G., & Malonia, S. K. (2023). Next-Generation Sequencing Technology: Current Trends and Advancements. Biology, 12(7), 997. https://doi.org/10.3390/biology12070997
Sati, H., Carrara, E., Savoldi, A., Hansen, P., Garlasco, J., Campagnaro, E., Boccia, S., Castillo-Polo, J. A., Magrini, E., Garcia-Vello, P., Wool, E., Gigante, V., Duffy, E., Cassini, A., Huttner, B., Pardo, P. R., Naghavi, M., Mirzayev, F., Zignol, M., … Umubyeyi Nyaruhirira, A. (2025). The WHO Bacterial Priority Pathogens List 2024: a Prioritisation Study to Guide Research, Development, and Public Health Strategies Against Antimicrobial Resistance. The Lancet Infectious Diseases, 25(9), 1033–1043. https://doi.org/10.1016/S1473-3099(25)00118-5
Schloter M, Nannipieri P, Sørensen SJ, Elsas JD Van. 2018. 10.1007%2Fs00374-017-1248-3. Biol Fertil Soils. 54(2):1–10.
Seifert, J. (2022). The Intestinal Microbiome and Metabolome of Dairy Cows Under Challenging Conditions. University of Hohenheim, Germany.
Selim, M. S., Mounier, M. M., Abdelhamid, S. A., Hamed, A. A., Elsoud, M. M. A., & Mohamed, S. S. (2024). Characterization, modeling, and anticancer activity of L.arginase production from marine Bacillus licheniformis OF2. BMC Biotechnology, 24(6), 1–16. https://doi.org/10.1186/s12896-024-00829-6
Sessitsch A, Wakelin S, Schloter M, Maguin E, Cernava T, Champomier-Verges M-C, Charles TC, Cotter PD, Ferrocino I, Kriaa A, et al., 2023. Microbiome interconnectedness throughout environments with major consequences for healthy people and a healthy planet. Microbiol. Mol. Biol. Rev. 87(3):1–26.doi:10.1128/mmbr.00212-22.
Seyedmousavi, S., Bosco, S. D. M. G., Hoog, S. De, Ebel, F., Elad, D., Gomes, R. R., Jacobsen, I. D., Jensen, H. E., Martel, A., Mignon, B., Rodrigues, A. M., Pasmans, F., Pieckov, E., Singh, K., Vicente, V. A., Wibbelt, G., & Guillot, J. (2018). Fungal infections in animals : a patchwork of different situations. Medical Mycology, 54, 165–187. https://doi.org/10.1093/mmy/myx104
Sharma, S. (2012). Bioremediation: Features, Strategies and Applications. Asian Journal of Pharmacy and Life Science, 2(2), 202–213.
Sharma, S., Kaur, S., Naguib, M., Bragg, A., Schneider, A., Kulkarni, R. R., Nazmi, A., & Abdelaziz, K. (2025). Major foodborne bacterial pathogens in poultry : Implications for human health and the poultry industry and probiotic mitigation strategies. Microorganisms, 13, 1–41.
Sheikh, S. M., Hussain, U., Umare, P. D., Jethani, D. L., & Prasad, S. K. (2025). Marine Archaea and Their Functional Networks in Oceanic Biogeochemical Cycling. Springer Nature, 2(74).
Shen, Y., Fan, N., Ma, S. xia, Cheng, X., Yang, X., & Wang, G. (2025). Gut Microbiota Dysbiosis: Pathogenesis, Diseases, Prevention, and Therapy. MedComm, 6(5), e70168. https://doi.org/10.1002/mco2.70168
Shi, S., Valle-Rodríguez, J. O., Siewers, V., & Nielsen, J. (2011). Prospects for microbial biodiesel production. Biotechnology Journal, 6(3), 277–285. https://doi.org/10.1002/biot.201000117
Shin, D., Byun, W. S., Moon, K., Kwon, Y., Bae, M., Um, S., Lee, S. K., & Oh, D.-C. (2018). Coculture of Marine Streptomyces sp. With Bacillus sp. Produces a New Piperazic Acid-Bearing Cyclic Peptide. Frontiers in Chemistry, 6(498), 1–12. https://doi.org/10.3389/fchem.2018.00498
Shyam, K. P., Rajkumar, P., Ramya, V., Sivabalan, S., Kings, A. J., & Miriam, L. R. M. (2021). Exopolysaccharide production by optimized medium using novel marine Enterobacter cloacae MBB8 isolate and its antioxidant potential. Carbohydrate Polymer Technologies and Applications, 2, 100070. https://doi.org/10.1016/j.carpta.2021.100070
Sidebottom, A. M. (2023). A Brief History of Microbial Study and Techniques for Exploring the Gastrointestinal Microbiome. Clinics in Colon and Rectal Surgery, 36(2), 98–104. https://doi.org/10.1055/s-0042-1760678
Silva, R. R. A., Marques, C. S., Arruda, T. R., Teixeira, S. C., & de Oliveira, T. V. (2023). Biodegradation of Polymers: Stages, Measurement, Standards and Prospects. Macromol, 3(2), 371–399. https://doi.org/10.3390/macromol3020023
Simon, J., Marchesi, J. R., Mougel, C., & Selosse, M. (2019). Host-microbiota interactions : from holobiont theory to analysis. 1–5.
Sipriyadi, S., Cahlia, U., Darwis, W., Wibowo, R. H., Nugraheni, E., & Sariyanti, M. (2021). Identification bacteria associated with Haliclona sp. sponges from Enggano Island, Indonesia with antimicrobial activity against human pathogens. Malays J Microbiol, 17(2), 178-189. http://dx.doi.org/10.21161/mjm. 200843
Sipriyadi, S., Nurfahmi, R. I., Cahlia, U., Wibowo, R. H., Darwis, W., & Nugraheni, E. (2022). Potential of marine sponge Jaspis sp.‐associated bacteria as an antimicrobial producer in Enggano Island. Indones J Biotechnol, 27(3), 163-170. https://doi.org/10.22146/ijbiotech.65943
Siraj, S., Khan, M. A., Hamayun, M., Ali, S., Khan, S. A., Hussain, A., Iqbal, A., Khan, H., Khan, H., Kang, S.-M., & Lee, I.-J. (2022). Microbacterium oxydans Regulates Physio-Hormonal and Molecular Attributes of Solanum lycopersicum under Drought Stress. Agronomy, 12(12), 1–16. https://doi.org/10.3390/agronomy12123224
Smith S., Read D. 2009. Mycorrhizal Symbiosis (Third Edition). Soil Sci. Soc. Am. J. 73(1):253.doi:10.2136/sssaj2008.0015br.
Soumare, A., Diedhiou, A. G., Thuita, M., Hafidi, M., Ouhdouch, Y., Gopalakrishnan, S., & Kouisni, L. (2020). Exploiting Biological Nitrogen Fixation: A Route Towards a Sustainable Agriculture. Plants, 9(1011), 1–22. http://dx.doi.org/10.3390/plants9081011
Srinivasan, R., Kannappan, A., Shi, C., & Lin, X. (2021). Marine Bacterial Secondary Metabolites : A Treasure House for Structurally Unique and Effective Antimicrobial Compounds. Marine Drugs, 19(530), 1–36. https://doi.org/10.3390/md19100530
Sudiartha, G. A. W., Imai, T., Mamimin, C., & Reungsang, A. (2023). Effects of Temperature Shifts on Microbial Communities and Biogas Production: An In-Depth Comparison. Fermentation, 9(7), 1–16. https://doi.org/10.3390/fermentation9070642
Suman, J., Rakshit, A., Ogireddy, S. D., Singh, S., Gupta, C., & Chandrakala, J. (2022). Microbiome as a Key Player in Sustainable Agriculture and Human Health. Frontiers in Soil Science, 2(821589), 1–13. https://doi.org/10.3389/fsoil.2022.821589
Sun, W., Wu, W., Liu, X., Zaleta-pinet, D. A., & Clark, B. R. (2019). Bioactive Compounds Isolated from Marine-Derived Microbes in China : 2009 – 2018. Marine Drugs, 17(339), 1–26. https://doi.org/doi:10.3390/md17060339
Supratman, L., A’yun, Q., Lathifah, S. S., Rosyunita, Nurlaelah, I., Djasfar, S. P., Sianturi, R. M. D., Aqilah, S., Herawati, D., & Savana, T. (2025). Mikrobiologi (L. Supratman (ed.); Cetakan 1, Vol. 6). Cendekia Global Mandiri.
Takeuchi, Y., Mizukami, H., Kudoh, K., Osonoi, S., Sasaki, T., Kushibiki, H., Ogasawara, S., Hara, Y., Igawa, A., Pan, X., Yamada, T., Yamazaki, K., Mikami, T., Daimon, M., Yagihashi, S., Hakamada, K., & Nakaji, S. (2022). The Diversity and Abundance of Gut Microbiota are Associated with The Pain Sensation Threshold in The Japanese Population. Neurobiology of Disease, 173, 105839. https://doi.org/10.1016/j.nbd.2022.105839
Talapko, J., Talapko, D., Matic, A., & Škrlec, I. (2022). Microorganisms as New Sources of Energy. Energies, 15(6385), 1–20. https://doi.org/ 10.3390/en15176365
Talapko, J., Talapko, D., Matić, A., & Škrlec, I. (2022). Microorganisms as New Sources of Energy. Energies, 15(8), 1–20. https://doi.org/10.3390/en15176365
Tamam, B., Syah, D., Suhartono, M. T., Kusuma, W. A., Tachibana, S., & Lioe, H. N. (2019). Proteomic Study of Bioactive Peptides from Tempe. Journal of Bioscience and Bioengineering, 128(2), 241–248. https://doi.org/10.1016/j.jbiosc.2019.01.019
Tan, S. Y., & Tatsumura, Y. (2015). Alexander Fleming (1881–1955): Discoverer of penicillin. Singapore Medical Journal, 56(7), 366–367. https://doi.org/10.11622/smedj.2015105
Tariq, A., Guo, S., Farhat, F., Farhat, F., & Shen, X. (2025). Engineering synthetic microbial communities: diversity and applications in soil for plant resilience. Agronomy, 15(3), 1–21. https://doi.org/10.3390/agronomy15030513
Teoh, S. Q., Chin, N. L., Chong, C. W., Ripen, A. M., How, S., & Lim, J. J. L. (2024). A Review on Health Benefits and Processing of Tempeh With Outlines on Its Functional Microbes. Future Foods, 9, 100330. https://doi.org/10.1016/j.fufo.2024.100330
Tesema, H. A. (2025). Microbial Contributions to Forest Ecosystem Resilience in Ethiopia: A Systematic Review and Future Directions. Ecological Indicators, 179(June), 114215. https://doi.org/10.1016/j.ecolind.2025.114215
Timmusk, S., Behers, L., Muthoni, J., Muraya, A., & Aronsson, A.-C. (2017). Perspectives and Challenges of Microbial Application for Crop Improvement. Front. Plant Sci., 8(49), 1–10. https://doi.org/10.3389/fpls.2017.00049
Trivedi P, Leach JE, Tringe SG, Sa T, Singh BK. 2020. Plant–microbiome interactions: from community assembly to plant health. Nat. Rev. Microbiol. 18(11):607–621.doi:10.1038/s41579-020-0412-1.
Trivedi, P., Leach, J. E., Tringe, S. G., Sa, T., & Singh, B. K. (2020). Plant–microbiome interactions: from community assembly to plant health. Nature Reviews Microbiology, 18(11), 607–621. https://doi.org/10.1038/s41579-020-0412-1
Tzec-Interián, J. A., González-Padilla, D., & Góngora-Castillo, E. B. (2025). Bioinformatics perspectives on transcriptomics: A comprehensive review of bulk and single-cell RNA sequencing analyses. Quantitative Biology, 13(2), e78. https://doi.org/10.1002/qub2.78
Urry, L. A., Chain, M. L., Wasserman, S. A., Minorsky, P. V, & Orr, R. B. (2020). Campbell Biology (Twelfth ed). Pearson.
Uzair, B., Bano, A., Niazi, M. B. K., Khan, F., Mujtaba, G., Habiba, U., Khan, N. N., & Khan, B. A. (2018). In vitro antifungal activity of 9, 10-dihydrophenanthrene-2- carboxylic acid isolated from a marine bacterium : Pseudomonas putida. Pakistan Journal of Pharmaceutical Sciences, 31(6), 2733–2736.
Vacheron J, Desbrosses G, Bouffaud ML, Touraine B, Moënne-Loccoz Y, Muller D, Legendre L, Wisniewski-Dyé F, Prigent-Combaret C. 2013. Plant growth-promoting rhizobacteria and root system functioning. Front. Plant Sci. 4(SEP).doi:10.3389/fpls.2013.00356.
van Aalst, A. C. A., de Valk, S. C., van Gulik, W. M., Jansen, M. L. A., Pronk, J. T., & Mans, R. (2022). Pathway engineering strategies for improved product yield in yeast-based industrial ethanol production. Synthetic and Systems Biotechnology, 7(1), 554–566. https://doi.org/10.1016/j.synbio.2021.12.010
Van Der Heijden MGA, Bardgett RD, Van Straalen NM. 2008. The unseen majority: Soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol. Lett. 11(3):296–310.doi:10.1111/j.1461-0248.2007.01139.x.
Van, T. T. H., Smooker, P. M., & Wu, S. (2023). Editorial : Bacterial diseases in poultry : Biology , virulence and prevention in the age of reduced antibiotic use. Frontiers in Veterinary Science. https://doi.org/ 10.1099/ijsem.0.0
Varghese, S., Dhanraj, N. D., Rebello, S., Sindhu, R., Binod, P., Pandey, A., Jisha, M. S., & Awasthi, M. K. (2022). Leads and hurdles to sustainable microbial bioplastic production. Chemosphere, 305(3), 135390. https://doi.org/10.1016/j.chemosphere.2022.135390
Vello, F., Filippini, F., & Righetto, I. (2024). Bioinformatics Goes Viral: I. Databases, Phylogenetics and Phylodynamics Tools for Boosting Virus Research. Viruses, 16(9), 1425. https://doi.org/10.3390/v16091425
Vermelho, A. B., Cardoso, V. da S., Domingos, L. T. S., Akamine, I. T., Amenu, B., Osei, B. K., & Neves Junior, A. (2025). Advancements in Microbial Applications for Sustainable Food Production. Foods, 14(10), 1–49. https://doi.org/10.3390/foods14193427
Vermelho, A. B., Cardoso, V. da S., Domingos, L. T. S., Akamine, I. T., Amenu, B., Osei, B. K., & Neves Junior, A. (2025). Advancements in Microbial Applications for Sustainable Food Production. Foods, 14(19), 3427. https://doi.org/10.3390/foods14193427
Visca, A., Gregorio, L. Di, Costanzo, M., Clagnan, E., Nolfi, L., Bernini, R., Orgiazzi, A., Jones, A., Vitali, F., Mocali, S., & Bevivino, A. (2025). Microbial Bioindicators for Monitoring the Impact of Emerging Contaminants on Soil Health in the European Framework. 1–16.
Vitorino, L. C., & Bessa, L. A. (2017). Technological Microbiology : Development and Applications. Frontiers in Microbiology, 8(827), 1–23. https://doi.org/10.3389/fmicb.2017.00827
Vivoda, V., Krame, G., & Spraggon, M. (2023). Oil Theft, Energy Security and Energy Transition in Mexico. Resources, 12(2), 1–15. https://doi.org/10.3390/resources12020030
Wagg C, Bender SF, Widmer F, Van Der Heijden MGA. 2014. Soil biodiversity and soil community composition determine ecosystem multifunctionality. Proc. Natl. Acad. Sci. U. S. A. 111(14):5266–5270.doi:10.1073/pnas.1320054111.
Wahyudi, A. T., Nursari, R., Purwaningtyas, W. E., Cahlia, U., & Priyanto, J. A. (2022). Crude extract of blue-green pigment derived from the marine bacterium Pseudomonas aeruginosa P1.S9 has antibacterial, antioxidant, and cytotoxic activities. Online J. Biol. Sci, 22(1), 118-125. https://doi.org/10.3844/ojbsci.2022.118.125
Wang, C., Bai, X., & Wang, J. (2025). Exploring the diagnostic landscape of Mannheimia haemolytica : technologies, applications, and perspectives. Frontiers in Microbiology, October, 1–13. https://doi.org/ 10.3389/fmicb.2025.1680478
Wang, J., Long, Y., Yu, G., Wang, G., Zhou, Z., Li, P., Zhang, Y., Yang, K., & Wang, S. (2022). A Review on Microorganisms in Constructed Wetlands for Typical Pollutant Removal: Species, Function, and Diversity. Frontiers in Microbiology, 13(April). https://doi.org/10.3389/fmicb.2022.845725
Wang, J., Peñuelas, J., Shi, X., Liu, Y., Delgado Baquerizo, M., Mao, J., Zhang, G., Liu, C., & Pan, G. (2024). Soil Microbial Biodiversity Supports The Delivery of Multiple Ecosystem Functions Under Elevated CO2 and Warming. Communications Earth and Environment, 5(1), 1–9. https://doi.org/10.1038/s43247-024-01767-z
Wang, S., Li, X., Yang, W., & Huang, R. (2024). Exploring the secrets of marine microorganisms : Unveiling secondary metabolites through metagenomics. Microbial Biotechnology, 17(e14533), 1–13. https://doi.org/10.1111/1751-7915.14533
Wang, W., Bi, S., Li, F., Degen, A. A., Li, S., Huang, M., Luo, B., Zhang, T., & Qi, S. (2025). Soil organic matter composition affects ecosystem multifunctionality by mediating the composition of microbial communities in long ‑ term restored meadows. Environmental Microbiome. https://doi.org/10.1186/s40793-025-00678-6
Wastyk, H. C., Fragiadakis, G. K., Perelman, D., Dahan, D., Merrill, B. D., Yu, F. B., Topf, M., Gonzalez, C. G., Van Treuren, W., Han, S., Robinson, J. L., Elias, J. E., Sonnenburg, E. D., Gardner, C. D., & Sonnenburg, J. L. (2021). Gut-Microbiota-Targeted Diets Modulate Human Immune Status. Cell, 184(16), 4137-4153.e14. https://doi.org/10.1016/j.cell.2021.06.019
Wibowo, R. H., Sipriyadi, Adfa, M., Prastya, M. E., Cahlia, U., Fahmi, R. I. N., & Rothman, D. D. (2025). Bioprospeksi Senyawa Antibakteri dari Bakteri yang Berasosiasi pada Bulu Babi asal Kabupaten Kaur , Bengkulu. Jurnal Kelautan Tropis, 28(3), 487–496. https://doi.org/10.14710/jkt.v28i3.29412
Widianingrum, D. C., & Septio, R. W. (2023). Peran Peternakan dalam Mendukung Ketahanan Pangan Indonesia : Kondisi, Potensi, dan Peluang Pengembangan. National Multidisciplinary Sciences, 2(3), 285–291.
Williams, J., Pettorelli, N., Hartmann, A. C., Quinn, R. A., Plaisance, L., Mahoney, M. O., Meyer, C. P., Fabricius, K. E., Knowlton, N., & Ransome, E. (2024). Decline of a distinct coral reef holobiont community under ocean acidification. Microbiome, 1–16. https://doi.org/10.1186/s40168-023-01683-y
Wirth, R., Kovács, E., Maráti, G., Bagi, Z., Rákhely, G., & Kovács, K. L. (2012). Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing. Biotechnology for Biofuels, 5, 1–16. https://doi.org/10.1186/1754-6834-5-41
Wojtowicz, W., & Mlynarz, P. (2016). Metabolomics and fluxomics in biotechnology: Current trends. BioTechnologia, 97(2), 137–144. https://doi.org/10.5114/bta.2016.60783
Wolosowicz, M., Lukaszuk, B., & Chabowski, A. (2020). The Causes of Insulin Resistance in Type 1 Diabetes Mellitus: Is There a Place for Quaternary Prevention? International Journal of Environmental Research and Public Health, 17(22), 1–13. https://doi.org/10.3390/ijerph17228651
Wu, M., Zuo, S., Maiorano, G., Kosobucki, P., & Stadnicka, K. (2022). How to employ metabolomic analysis to research on functions of prebiotics and probiotics in poultry gut health? Frontiers in Microbiology, 13. https://doi.org/10.3389/fmicb.2022.1040434
Wu, P., Huang, J., Zheng, Y., Yang, Y., Zhang, Y., He, F., Chen, H., Quan, G., Yan, J., Li, T., & Gao, B. (2019). Environmental Occurrences, Fate, and Impacts of Microplastics. Ecotoxicology and Environmental Safety, 184(April), 109612. https://doi.org/10.1016/j.ecoenv.2019.109612
Wu, X., Zhou, Q., Zeng, H., & Hu, X. (2024). Lake Microbiome Composition Determines Community Adaptability to Warming Perturbations. Ecological Processes, 13(1), 1–15. https://doi.org/10.1186/s13717-024-00516-6
Wubs ERJ, Van Der Putten WH, Bosch M, Bezemer TM. 2016. Soil inoculation steers restoration of terrestrial Ecosystems. Nat. Plants. 2(8):1–5.doi:10.1038/NPLANTS.2016.107
Wurzelmann, M., Romeika, J., & Sun, D. (2017). Therapeutic Potential of Brain-Derived Neurotrophic Factor (BDNF) and a Small Molecular Mimics of BDNF for Traumatic Brain Injury. Neural Regeneration Research, 12(1), 7–12. https://doi.org/10.4103/1673-5374.198964
Xiao, S., Chen, N., Chai, Z., Zhou, M., Xiao, C., Zhao, S., & Yang, X. (2022). Secondary Metabolites from Marine-Derived Bacillus : A Comprehensive Review of Origins, Structures, and Bioactivities. Marine Drugs, 20(567), 1–31. https://doi.org/10.3390/md20090567
Xu, P., Ding, L., Wei, J., Li, Q., Gui, M., He, X., Su, D., He, S., & Jin, H. (2019). A new aquatic pathogen inhibitor produced by the marine fungus Aspergillus. Aquaculture, 734670. https://doi.org/10.1016/j.aquaculture.2019.734670
Xu, X., Dong, Y., Yang, J., Wang, L., Ma, L., Song, F., & Ma, X. (2024). Secondary Metabolites from Marine-Derived Fungus Penicillium rubens BTBU20213035. Journal of Fungi, 10(424), 1–12. https://doi.org/10.3390/jof10060424
Xu, X., Thornton, P. E., & Post, W. M. (2013). A global analysis of soil microbial biomass carbon , nitrogen and phosphorus in terrestrial ecosystems. Global Ecology and Biogeography, 22, 737–749. https://doi.org/10.1111/geb.12029
Xu, Y., Song, Y., Ning, Y., Li, S., Qu, Y., Jiao, B., & Lu, X. (2024). Macrolactin XY, a Macrolactin Antibiotic from Marine-Derived Bacillus subtilis sp. 18. Marine Drugs, 22(331), 1–14. https://doi.org/10.3390/md22080331
Yang, H., Tian, J., Zhao, J., & Zhao, Y. (2024). The application of newcastle disease virus ( NDV ): vaccine. Viruses, 26, 1–17. https://doi.org/https://doi.org/10.3390/ v16060886
Yang, Y. (2025). The Application of Genomics in Agriculture. Agricultural Science and Food Processing, 2(1), 26–46. https://doi.org/10.62762/ASFP.2025.111574
Yilmaz, B., Baertschi, I., Meier, K. H. U., Le Gac, C., Jordi, S. B. U., Black, C., Li, J., Lindholm, A. K., Ciftci, P., Evans, J., Boatman, B., Knowles, S. C. L., Hanski, E., Baines, J. F., Cowan, P. J., Grassi, F., Maffei, S., Bozza, M. T., Vidal, V. M., … Macpherson, A. J. (2025). A global survey of taxa-metabolic associations across mouse microbiome communities. Cell Host & Microbe, 33(11), 1960-1976.e10. https://doi.org/10.1016/j.chom.2025.10.010
Yunilas, HW, T., Ginting, N., & SS, I. (2019). Aplikasi mikroba pada pakan ternak. Anugrah Pangeran Jaya Press.
Zabermawi, N. M., Alsulaimany, F. A. S., El-Saadony, M. T., & El-Tarabily, K. A. (2022). New eco-friendly trends to produce biofuel and bioenergy from microorganisms: An updated review. Saudi Journal of Biological Sciences. https://doi.org/10.1016/j.sjbs.2022.02.024
Zachary, J. F. (2020). Mechanisms of Microbial Infections 1. Elsevier, January.
Zaman, S., Shan, Z., Zaman, S., & Shan, Z. (2024). Literature Review of Proteomics Approach Associated with Coffee. Foods, 13(11). https://doi.org/10.3390/foods13111670
Zhang, Y., Qian, F., & Bao, Y. (2025). Variations of Microbiota and Metabolites in Rhizosphere Soil of Carmona microphylla at the Co-contaminated Site with Polycyclic Aromatic Hydrocarbons and Heavy Metals. Ecotoxicology and Environmental Safety, 290(117734). https://doi.org/10.1016/j.ecoenv.2025.117734
Zhou, W., Liang, H., Qin, X., Cao, D., Zhu, X., Ju, J., Shen, B., Duan, Y., & Huang, Y. (2020). The Isolation of Pyrroloformamide Congeners and Characterization of Their Biosynthetic Gene Cluster. Journal of Natural Medicines, 83(2), 202–209. https://doi.org/10.1021/acs.jnatprod.9b00321
Zhu, W., Jiang, X., Sun, H., Li, Y., Shi, W., Zheng, M., Liu, D., Ma, A., & Feng, X. (2021). Global Lysine Acetylation and 2-Hydroxyisobutyrylation Profiling Reveals the Metabolism Conversion Mechanism in Giardia lamblia. Molecular & Cellular Proteomics, 20, 100043. https://doi.org/10.1074/mcp.RA120.002353
Zhu, Y., Wang, Y., Gao, H., Wang, H., Wan, Z., Jiang, Y., Xin, F., Zhang, W., & Jiang, M. (2021). Current advances in microbial production of 1,3-propanediol. Biofuels, Bioproducts and Biorefining, 15(5), 1566–1583. https://doi.org/10.1002/bbb.2254
Zilber-rosenberg, I., & Rosenberg, E. (2008). Role of microorganisms in the evolution of animals and plants : the hologenome theory of evolution. https://doi.org/10.1111/j.1574-6976.2008.00123.x
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